[DATALAD RUNCMD] Compute NYU/sub-0051001

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/NYU/sub-0051001/anat/sub-0051001_T1w.nii.gz"
 ],
 "outputs": [
  "NYU/sub-0051001"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU/sub-0051001/label/catROI_sub-0051001_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vv/58/MD5E-s58256--bb9e17635e02e8f1a662c73c7d6e19fb.mat/MD5E-s58256--bb9e17635e02e8f1a662c73c7d6e19fb.mat

NYU/sub-0051001/label/catROI_sub-0051001_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/k0/M3/MD5E-s188935--1e0195e45e9f2b07f08a35d641be9fc4.xml/MD5E-s188935--1e0195e45e9f2b07f08a35d641be9fc4.xml

NYU/sub-0051001/label/catROIs_sub-0051001_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/j6/jK/MD5E-s120236--2ced354c993c8e611d725976568aa400.mat/MD5E-s120236--2ced354c993c8e611d725976568aa400.mat

NYU/sub-0051001/label/catROIs_sub-0051001_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qm/Pf/MD5E-s332117--61e71bd03c2c6dcd52bb3d18d1de00da.xml/MD5E-s332117--61e71bd03c2c6dcd52bb3d18d1de00da.xml

NYU/sub-0051001/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051001_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU/sub-0051001/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051001_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kJ/MM/MD5E-s154822--de55dfa4443198ec94ad95f1c73a6196.nii.gz/MD5E-s154822--de55dfa4443198ec94ad95f1c73a6196.nii.gz

NYU/sub-0051001/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051001_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU/sub-0051001/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051001_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qV/pX/MD5E-s173028--8b090eae6b9ed1745f998206e485f865.nii.gz/MD5E-s173028--8b090eae6b9ed1745f998206e485f865.nii.gz

NYU/sub-0051001/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051001_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU/sub-0051001/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051001_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/98/mX/MD5E-s234147--1f5d4043a7b44821dd493afb3a4cdadd.nii.gz/MD5E-s234147--1f5d4043a7b44821dd493afb3a4cdadd.nii.gz

NYU/sub-0051001/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051001_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU/sub-0051001/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051001_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J0/pF/MD5E-s259660--28f63551e2b017fba779ce01a5755d12.nii.gz/MD5E-s259660--28f63551e2b017fba779ce01a5755d12.nii.gz

NYU/sub-0051001/mri/Tian_Subcortex_S2_7T_sub-0051001_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU/sub-0051001/mri/Tian_Subcortex_S2_7T_sub-0051001_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z2/17/MD5E-s20612--7733b9b4ad4ddcf8af5ad440a2f12fd5.nii.gz/MD5E-s20612--7733b9b4ad4ddcf8af5ad440a2f12fd5.nii.gz

NYU/sub-0051001/mri/aal3_sub-0051001_T1w.csv

@@ -0,0 +1 @@
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NYU/sub-0051001/mri/aal3_sub-0051001_T1w.nii.gz

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NYU/sub-0051001/mri/anatomy3_sub-0051001_T1w.csv

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NYU/sub-0051001/mri/anatomy3_sub-0051001_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WP/5F/MD5E-s122532--0cd94364a4bd8384b1371f5039371507.nii.gz/MD5E-s122532--0cd94364a4bd8384b1371f5039371507.nii.gz

NYU/sub-0051001/mri/anon_misub-0051001_T1w.nii.gz

@@ -0,0 +1 @@
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NYU/sub-0051001/mri/anon_msub-0051001_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gX/px/MD5E-s9736603--4ecccabe2904b6278746d6fd2f9e029d.nii.gz/MD5E-s9736603--4ecccabe2904b6278746d6fd2f9e029d.nii.gz

NYU/sub-0051001/mri/cat_sub-0051001_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/Gk/MD5E-s98434--26f7584d7269e121f8bd277d3295a524.nii.gz/MD5E-s98434--26f7584d7269e121f8bd277d3295a524.nii.gz

NYU/sub-0051001/mri/cobra_sub-0051001_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU/sub-0051001/mri/cobra_sub-0051001_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1w/Xq/MD5E-s41662--035d65313cd95818d21b9925d33349aa.nii.gz/MD5E-s41662--035d65313cd95818d21b9925d33349aa.nii.gz

NYU/sub-0051001/mri/hammers_sub-0051001_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU/sub-0051001/mri/hammers_sub-0051001_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fx/1k/MD5E-s137519--f2ef98077960ef3043a13b57b59a920c.nii.gz/MD5E-s137519--f2ef98077960ef3043a13b57b59a920c.nii.gz

NYU/sub-0051001/mri/ibsr_sub-0051001_T1w.csv

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NYU/sub-0051001/mri/ibsr_sub-0051001_T1w.nii.gz

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NYU/sub-0051001/mri/it_sub-0051001_T1w_affine_reorient.mat

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+../../../.git/annex/objects/23/M2/MD5E-s284--8c593bc5dd904c2f75201fc5a0772866.mat/MD5E-s284--8c593bc5dd904c2f75201fc5a0772866.mat

NYU/sub-0051001/mri/it_sub-0051001_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/g5/x5/MD5E-s284--acbff963e68b0e3f8ad019d57515a8c7.mat/MD5E-s284--acbff963e68b0e3f8ad019d57515a8c7.mat

NYU/sub-0051001/mri/iy_sub-0051001_T1w.nii.gz

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NYU/sub-0051001/mri/julichbrain_sub-0051001_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU/sub-0051001/mri/julichbrain_sub-0051001_T1w.nii.gz

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NYU/sub-0051001/mri/lpba40_sub-0051001_T1w.csv

@@ -0,0 +1 @@
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NYU/sub-0051001/mri/lpba40_sub-0051001_T1w.nii.gz

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NYU/sub-0051001/mri/m0wp1sub-0051001_T1w.nii.gz

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NYU/sub-0051001/mri/m0wp2sub-0051001_T1w.nii.gz

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NYU/sub-0051001/mri/m0wp3sub-0051001_T1w.nii.gz

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NYU/sub-0051001/mri/mori_sub-0051001_T1w.csv

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NYU/sub-0051001/mri/mori_sub-0051001_T1w.nii.gz

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NYU/sub-0051001/mri/mwp1sub-0051001_T1w.nii.gz

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NYU/sub-0051001/mri/mwp2sub-0051001_T1w.nii.gz

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NYU/sub-0051001/mri/mwp3sub-0051001_T1w.nii.gz

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NYU/sub-0051001/mri/neuromorphometrics_sub-0051001_T1w.csv

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NYU/sub-0051001/mri/neuromorphometrics_sub-0051001_T1w.nii.gz

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NYU/sub-0051001/mri/p0sub-0051001_T1w.nii.gz

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NYU/sub-0051001/mri/p1sub-0051001_T1w.nii.gz

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NYU/sub-0051001/mri/p2sub-0051001_T1w.nii.gz

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NYU/sub-0051001/mri/p3sub-0051001_T1w.nii.gz

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NYU/sub-0051001/mri/rp1sub-0051001_T1w_affine.nii.gz

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NYU/sub-0051001/mri/rp2sub-0051001_T1w_affine.nii.gz

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NYU/sub-0051001/mri/rp3sub-0051001_T1w_affine.nii.gz

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NYU/sub-0051001/mri/t_sub-0051001_T1w_affine_reorient.mat

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NYU/sub-0051001/mri/t_sub-0051001_T1w_rigid_reorient.mat

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NYU/sub-0051001/mri/thalamus_sub-0051001_T1w.csv

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NYU/sub-0051001/mri/thalamus_sub-0051001_T1w.nii.gz

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NYU/sub-0051001/mri/wj_sub-0051001_T1w.nii.gz

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NYU/sub-0051001/mri/wmisub-0051001_T1w.nii.gz

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NYU/sub-0051001/mri/wmsub-0051001_T1w.nii.gz

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NYU/sub-0051001/mri/wp0sub-0051001_T1w.nii.gz

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NYU/sub-0051001/mri/wp1sub-0051001_T1w.nii.gz

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NYU/sub-0051001/mri/wp2sub-0051001_T1w.nii.gz

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NYU/sub-0051001/mri/wp3sub-0051001_T1w.nii.gz

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