[DATALAD RUNCMD] Compute USM/sub-0050501

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050501/anat/sub-0050501_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050501"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050501/label/catROI_sub-0050501_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/WX/zq/MD5E-s61432--8dd3c549388cd085ae6fdbd70ff7e499.mat/MD5E-s61432--8dd3c549388cd085ae6fdbd70ff7e499.mat

USM/sub-0050501/label/catROI_sub-0050501_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/62/2k/MD5E-s188938--0c6ca395e2c07c80adeb59f0b2a4ca29.xml/MD5E-s188938--0c6ca395e2c07c80adeb59f0b2a4ca29.xml

USM/sub-0050501/label/catROIs_sub-0050501_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/7j/JQ/MD5E-s120058--0ec049ed22bfbf2205139de7a444efd5.mat/MD5E-s120058--0ec049ed22bfbf2205139de7a444efd5.mat

USM/sub-0050501/label/catROIs_sub-0050501_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gm/VP/MD5E-s332185--28c8e8a5885b10086775a5e39b6dfecf.xml/MD5E-s332185--28c8e8a5885b10086775a5e39b6dfecf.xml

USM/sub-0050501/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050501_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050501/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j7/8q/MD5E-s402687--300861a800a5b779c6fd4fd5da944afe.nii.gz/MD5E-s402687--300861a800a5b779c6fd4fd5da944afe.nii.gz

USM/sub-0050501/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050501_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050501/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xZ/F3/MD5E-s449045--b98bf1a5ae31173bd08a3c0a5b89c6af.nii.gz/MD5E-s449045--b98bf1a5ae31173bd08a3c0a5b89c6af.nii.gz

USM/sub-0050501/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050501_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050501/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3p/zX/MD5E-s649361--bbc37df9053b5e3b46811aa50823ca61.nii.gz/MD5E-s649361--bbc37df9053b5e3b46811aa50823ca61.nii.gz

USM/sub-0050501/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050501_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050501/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7J/4w/MD5E-s714315--3e8652919b34e7d8bdc7399f9d819f93.nii.gz/MD5E-s714315--3e8652919b34e7d8bdc7399f9d819f93.nii.gz

USM/sub-0050501/mri/Tian_Subcortex_S2_7T_sub-0050501_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050501/mri/Tian_Subcortex_S2_7T_sub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jM/5Z/MD5E-s67909--1b31be71b3938c1d03587e28c30f79d7.nii.gz/MD5E-s67909--1b31be71b3938c1d03587e28c30f79d7.nii.gz

USM/sub-0050501/mri/aal3_sub-0050501_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050501/mri/aal3_sub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3Q/W0/MD5E-s455822--8c3c4102233e79804b3096c6484e4cb3.nii.gz/MD5E-s455822--8c3c4102233e79804b3096c6484e4cb3.nii.gz

USM/sub-0050501/mri/anatomy3_sub-0050501_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050501/mri/anatomy3_sub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3F/Xg/MD5E-s337175--60023e16e3aefd1dfd221e8d90246b63.nii.gz/MD5E-s337175--60023e16e3aefd1dfd221e8d90246b63.nii.gz

USM/sub-0050501/mri/anon_misub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p8/6G/MD5E-s17581465--faf5a51e29176d042facdab87724ebd6.nii.gz/MD5E-s17581465--faf5a51e29176d042facdab87724ebd6.nii.gz

USM/sub-0050501/mri/anon_msub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fv/F5/MD5E-s33614938--f9f9627d3695df43994ccef4305c01bc.nii.gz/MD5E-s33614938--f9f9627d3695df43994ccef4305c01bc.nii.gz

USM/sub-0050501/mri/cat_sub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2F/VW/MD5E-s253678--3a743c718ebb43eccf9cb1f0c948bdd6.nii.gz/MD5E-s253678--3a743c718ebb43eccf9cb1f0c948bdd6.nii.gz

USM/sub-0050501/mri/cobra_sub-0050501_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050501/mri/cobra_sub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/08/zj/MD5E-s128649--c80bf0bef8509e3fe07abe975cd1507e.nii.gz/MD5E-s128649--c80bf0bef8509e3fe07abe975cd1507e.nii.gz

USM/sub-0050501/mri/hammers_sub-0050501_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050501/mri/hammers_sub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XQ/4Z/MD5E-s360515--9b5878919219c081b769a2c33ab2a269.nii.gz/MD5E-s360515--9b5878919219c081b769a2c33ab2a269.nii.gz

USM/sub-0050501/mri/ibsr_sub-0050501_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050501/mri/ibsr_sub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5F/zM/MD5E-s386176--eeeae7dd2a2f5b03f2a92d8d85b2350a.nii.gz/MD5E-s386176--eeeae7dd2a2f5b03f2a92d8d85b2350a.nii.gz

USM/sub-0050501/mri/it_sub-0050501_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/F0/10/MD5E-s282--76ddc80a7883d20124860c874d4d5313.mat/MD5E-s282--76ddc80a7883d20124860c874d4d5313.mat

USM/sub-0050501/mri/it_sub-0050501_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fj/Qg/MD5E-s282--4492fdc7e7052287107188d16cd39c3f.mat/MD5E-s282--4492fdc7e7052287107188d16cd39c3f.mat

USM/sub-0050501/mri/iy_sub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mq/kw/MD5E-s161928363--4b3364b71aeef7034a02c666bcb54a0f.nii.gz/MD5E-s161928363--4b3364b71aeef7034a02c666bcb54a0f.nii.gz

USM/sub-0050501/mri/julichbrain_sub-0050501_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050501/mri/julichbrain_sub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q8/qv/MD5E-s477016--711a354660c2a916ad449561bd72e112.nii.gz/MD5E-s477016--711a354660c2a916ad449561bd72e112.nii.gz

USM/sub-0050501/mri/lpba40_sub-0050501_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050501/mri/lpba40_sub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050501/mri/m0wp1sub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050501/mri/m0wp2sub-0050501_T1w.nii.gz

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USM/sub-0050501/mri/m0wp3sub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vw/GK/MD5E-s2477270--404e3081a66a796ae7f2267f0235d993.nii.gz/MD5E-s2477270--404e3081a66a796ae7f2267f0235d993.nii.gz

USM/sub-0050501/mri/mori_sub-0050501_T1w.csv

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USM/sub-0050501/mri/mori_sub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050501/mri/mwp1sub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050501/mri/mwp2sub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p4/1x/MD5E-s2273869--ddc5f4ce248ca42ae4f0ae371a924aef.nii.gz/MD5E-s2273869--ddc5f4ce248ca42ae4f0ae371a924aef.nii.gz

USM/sub-0050501/mri/mwp3sub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050501/mri/neuromorphometrics_sub-0050501_T1w.csv

@@ -0,0 +1 @@
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USM/sub-0050501/mri/neuromorphometrics_sub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050501/mri/p0sub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050501/mri/p1sub-0050501_T1w.nii.gz

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USM/sub-0050501/mri/p2sub-0050501_T1w.nii.gz

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USM/sub-0050501/mri/p3sub-0050501_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050501/mri/rp1sub-0050501_T1w_affine.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050501/mri/rp2sub-0050501_T1w_affine.nii.gz

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USM/sub-0050501/mri/rp3sub-0050501_T1w_affine.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050501/mri/t_sub-0050501_T1w_affine_reorient.mat

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USM/sub-0050501/mri/t_sub-0050501_T1w_rigid_reorient.mat

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USM/sub-0050501/mri/thalamus_sub-0050501_T1w.csv

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USM/sub-0050501/mri/thalamus_sub-0050501_T1w.nii.gz

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USM/sub-0050501/mri/wj_sub-0050501_T1w.nii.gz

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USM/sub-0050501/mri/wmisub-0050501_T1w.nii.gz

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USM/sub-0050501/mri/wmsub-0050501_T1w.nii.gz

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USM/sub-0050501/mri/wp0sub-0050501_T1w.nii.gz

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USM/sub-0050501/mri/wp1sub-0050501_T1w.nii.gz

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USM/sub-0050501/mri/wp2sub-0050501_T1w.nii.gz

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