[DATALAD RUNCMD] Compute CMU_a/sub-0050664

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/CMU_a/sub-0050664/anat/sub-0050664_T1w.nii.gz"
 ],
 "outputs": [
  "CMU_a/sub-0050664"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

CMU_a/sub-0050664/label/catROI_sub-0050664_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q8/81/MD5E-s57817--91601ee808bddbe0e628bf684e8bdb82.mat/MD5E-s57817--91601ee808bddbe0e628bf684e8bdb82.mat

CMU_a/sub-0050664/label/catROI_sub-0050664_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/05/j2/MD5E-s188952--f441296a4c0c05e2267c2cc37f359283.xml/MD5E-s188952--f441296a4c0c05e2267c2cc37f359283.xml

CMU_a/sub-0050664/label/catROIs_sub-0050664_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/MM/j9/MD5E-s120103--e0737de3a7b36ae9aaf3811b5682d9ea.mat/MD5E-s120103--e0737de3a7b36ae9aaf3811b5682d9ea.mat

CMU_a/sub-0050664/label/catROIs_sub-0050664_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/mj/MD5E-s332069--da61cef31e853b249ff1f53c16ac116c.xml/MD5E-s332069--da61cef31e853b249ff1f53c16ac116c.xml

CMU_a/sub-0050664/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050664_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

CMU_a/sub-0050664/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qf/m0/MD5E-s159487--ac08d4282a7f120730bfd13f0b98b8be.nii.gz/MD5E-s159487--ac08d4282a7f120730bfd13f0b98b8be.nii.gz

CMU_a/sub-0050664/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050664_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

CMU_a/sub-0050664/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7Q/W4/MD5E-s179480--5120a748e2b3106af56748e098c44f25.nii.gz/MD5E-s179480--5120a748e2b3106af56748e098c44f25.nii.gz

CMU_a/sub-0050664/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050664_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

CMU_a/sub-0050664/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wx/ZP/MD5E-s236974--7a624dcaca51b30fcbf8eb2e3df0c6d2.nii.gz/MD5E-s236974--7a624dcaca51b30fcbf8eb2e3df0c6d2.nii.gz

CMU_a/sub-0050664/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050664_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

CMU_a/sub-0050664/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9P/g6/MD5E-s264944--7f0cab69250451a561eb9fa190fa3d6b.nii.gz/MD5E-s264944--7f0cab69250451a561eb9fa190fa3d6b.nii.gz

CMU_a/sub-0050664/mri/Tian_Subcortex_S2_7T_sub-0050664_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

CMU_a/sub-0050664/mri/Tian_Subcortex_S2_7T_sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pj/1Z/MD5E-s20265--84984a697b0357173f59b891f4ec7d48.nii.gz/MD5E-s20265--84984a697b0357173f59b891f4ec7d48.nii.gz

CMU_a/sub-0050664/mri/aal3_sub-0050664_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

CMU_a/sub-0050664/mri/aal3_sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zQ/vp/MD5E-s184650--62fb59776d5d7f37f2ac26ad8918d48a.nii.gz/MD5E-s184650--62fb59776d5d7f37f2ac26ad8918d48a.nii.gz

CMU_a/sub-0050664/mri/anatomy3_sub-0050664_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

CMU_a/sub-0050664/mri/anatomy3_sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K5/Mx/MD5E-s129856--5e74804b52ec25457b21971d29b0c62e.nii.gz/MD5E-s129856--5e74804b52ec25457b21971d29b0c62e.nii.gz

CMU_a/sub-0050664/mri/anon_misub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j5/53/MD5E-s7239364--f367b7f36adcb33236e707ec343ed646.nii.gz/MD5E-s7239364--f367b7f36adcb33236e707ec343ed646.nii.gz

CMU_a/sub-0050664/mri/anon_msub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xK/5G/MD5E-s7067495--d01d2e933f2b18bc4c54ffbaf5bda567.nii.gz/MD5E-s7067495--d01d2e933f2b18bc4c54ffbaf5bda567.nii.gz

CMU_a/sub-0050664/mri/cat_sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/76/4Q/MD5E-s97625--086c6778bc1b7a5bcdc231e384aa3c17.nii.gz/MD5E-s97625--086c6778bc1b7a5bcdc231e384aa3c17.nii.gz

CMU_a/sub-0050664/mri/cobra_sub-0050664_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

CMU_a/sub-0050664/mri/cobra_sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V4/x9/MD5E-s46059--8cf1a97fa8e7ae1ff942d6ffb969b260.nii.gz/MD5E-s46059--8cf1a97fa8e7ae1ff942d6ffb969b260.nii.gz

CMU_a/sub-0050664/mri/hammers_sub-0050664_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

CMU_a/sub-0050664/mri/hammers_sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3P/81/MD5E-s141816--2cf165d39578c7c886cbea5ccc5556a8.nii.gz/MD5E-s141816--2cf165d39578c7c886cbea5ccc5556a8.nii.gz

CMU_a/sub-0050664/mri/ibsr_sub-0050664_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

CMU_a/sub-0050664/mri/ibsr_sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2K/pk/MD5E-s150268--400f0b132140a0e9f9a076c1f2ea91b1.nii.gz/MD5E-s150268--400f0b132140a0e9f9a076c1f2ea91b1.nii.gz

CMU_a/sub-0050664/mri/it_sub-0050664_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xm/k9/MD5E-s282--e6b073a19c8fcfc17ee0f3582d6bda2b.mat/MD5E-s282--e6b073a19c8fcfc17ee0f3582d6bda2b.mat

CMU_a/sub-0050664/mri/it_sub-0050664_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/m2/4v/MD5E-s281--b9a9345adf62cbaa6627510a93da85f3.mat/MD5E-s281--b9a9345adf62cbaa6627510a93da85f3.mat

CMU_a/sub-0050664/mri/iy_sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mm/92/MD5E-s43593621--2bb784754ea5c005b85ab65262479b2d.nii.gz/MD5E-s43593621--2bb784754ea5c005b85ab65262479b2d.nii.gz

CMU_a/sub-0050664/mri/julichbrain_sub-0050664_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

CMU_a/sub-0050664/mri/julichbrain_sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P9/5j/MD5E-s191766--5fbf9a95db7fcbc2047ca321febfe700.nii.gz/MD5E-s191766--5fbf9a95db7fcbc2047ca321febfe700.nii.gz

CMU_a/sub-0050664/mri/lpba40_sub-0050664_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

CMU_a/sub-0050664/mri/lpba40_sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/61/3g/MD5E-s140497--6dd492796e8b401d28f225f5ecfa48cc.nii.gz/MD5E-s140497--6dd492796e8b401d28f225f5ecfa48cc.nii.gz

CMU_a/sub-0050664/mri/m0wp1sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3F/MZ/MD5E-s2588569--384abbe3fcbbea3c5f7cb1952449228a.nii.gz/MD5E-s2588569--384abbe3fcbbea3c5f7cb1952449228a.nii.gz

CMU_a/sub-0050664/mri/m0wp2sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qv/Fw/MD5E-s2325175--f5457f0d4c2bf9fb304be12e9efcfd6c.nii.gz/MD5E-s2325175--f5457f0d4c2bf9fb304be12e9efcfd6c.nii.gz

CMU_a/sub-0050664/mri/m0wp3sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9G/x8/MD5E-s2599183--e867c1519d88216935ee2b9140a67644.nii.gz/MD5E-s2599183--e867c1519d88216935ee2b9140a67644.nii.gz

CMU_a/sub-0050664/mri/mori_sub-0050664_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

CMU_a/sub-0050664/mri/mori_sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kg/GM/MD5E-s167704--5501ca81c6ccab759ec565abfd49573c.nii.gz/MD5E-s167704--5501ca81c6ccab759ec565abfd49573c.nii.gz

CMU_a/sub-0050664/mri/mwp1sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1g/qV/MD5E-s2592202--280d319e5a809c2559a025b7ad0ca58b.nii.gz/MD5E-s2592202--280d319e5a809c2559a025b7ad0ca58b.nii.gz

CMU_a/sub-0050664/mri/mwp2sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pP/Kp/MD5E-s2325060--6a4f64930021497514f71f13ec933002.nii.gz/MD5E-s2325060--6a4f64930021497514f71f13ec933002.nii.gz

CMU_a/sub-0050664/mri/mwp3sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w2/28/MD5E-s2595255--dcafa8572941f02894b7ae2360716297.nii.gz/MD5E-s2595255--dcafa8572941f02894b7ae2360716297.nii.gz

CMU_a/sub-0050664/mri/neuromorphometrics_sub-0050664_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

CMU_a/sub-0050664/mri/neuromorphometrics_sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K6/k9/MD5E-s195615--7ebd0b415b9db520271bd03096692b1c.nii.gz/MD5E-s195615--7ebd0b415b9db520271bd03096692b1c.nii.gz

CMU_a/sub-0050664/mri/p0sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mG/15/MD5E-s654187--c9d040386fbe28a850d4df1978ad3a52.nii.gz/MD5E-s654187--c9d040386fbe28a850d4df1978ad3a52.nii.gz

CMU_a/sub-0050664/mri/p1sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zz/f0/MD5E-s693047--497290335eff94ecadec66ba287b701f.nii.gz/MD5E-s693047--497290335eff94ecadec66ba287b701f.nii.gz

CMU_a/sub-0050664/mri/p2sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jf/p7/MD5E-s452915--3f528b3010ed09bb8cbeee2bdf921fb4.nii.gz/MD5E-s452915--3f528b3010ed09bb8cbeee2bdf921fb4.nii.gz

CMU_a/sub-0050664/mri/p3sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5F/8w/MD5E-s396551--4aff51bf626f4703ab6e438a5393e6e2.nii.gz/MD5E-s396551--4aff51bf626f4703ab6e438a5393e6e2.nii.gz

CMU_a/sub-0050664/mri/rp1sub-0050664_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6j/FZ/MD5E-s451027--9f3d45e1bf473cdb4dcb3db2a19c08b8.nii.gz/MD5E-s451027--9f3d45e1bf473cdb4dcb3db2a19c08b8.nii.gz

CMU_a/sub-0050664/mri/rp2sub-0050664_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qf/gQ/MD5E-s310676--5a0a11acbdce784eaa4fb78395327448.nii.gz/MD5E-s310676--5a0a11acbdce784eaa4fb78395327448.nii.gz

CMU_a/sub-0050664/mri/rp3sub-0050664_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K6/MK/MD5E-s299826--4d98c1ac73f2b0c68bad229ef818f01a.nii.gz/MD5E-s299826--4d98c1ac73f2b0c68bad229ef818f01a.nii.gz

CMU_a/sub-0050664/mri/t_sub-0050664_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z2/m1/MD5E-s284--dc4c4ac608c001dc28a5bfb46f076d5d.mat/MD5E-s284--dc4c4ac608c001dc28a5bfb46f076d5d.mat

CMU_a/sub-0050664/mri/t_sub-0050664_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qm/wf/MD5E-s283--96a13d1307c95ffc14629e10deb464ef.mat/MD5E-s283--96a13d1307c95ffc14629e10deb464ef.mat

CMU_a/sub-0050664/mri/thalamus_sub-0050664_T1w.csv

@@ -0,0 +1 @@
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CMU_a/sub-0050664/mri/thalamus_sub-0050664_T1w.nii.gz

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CMU_a/sub-0050664/mri/wj_sub-0050664_T1w.nii.gz

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CMU_a/sub-0050664/mri/wmisub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050664/mri/wmsub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050664/mri/wp0sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050664/mri/wp1sub-0050664_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050664/mri/wp2sub-0050664_T1w.nii.gz

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