[DATALAD RUNCMD] Compute KKI/sub-0050821

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/KKI/sub-0050821/anat/sub-0050821_T1w.nii.gz"
 ],
 "outputs": [
  "KKI/sub-0050821"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

KKI/sub-0050821/label/catROI_sub-0050821_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/JG/4k/MD5E-s61376--377c2d31ccb5d2b3dbd7c56e9257086f.mat/MD5E-s61376--377c2d31ccb5d2b3dbd7c56e9257086f.mat

KKI/sub-0050821/label/catROI_sub-0050821_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/v3/kw/MD5E-s188989--f953866e568d1daa1d34eea684e876a5.xml/MD5E-s188989--f953866e568d1daa1d34eea684e876a5.xml

KKI/sub-0050821/label/catROIs_sub-0050821_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qw/4Z/MD5E-s120084--483b15032f785e237bf3b6a9e77fd19f.mat/MD5E-s120084--483b15032f785e237bf3b6a9e77fd19f.mat

KKI/sub-0050821/label/catROIs_sub-0050821_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/jF/M8/MD5E-s332125--f664dbe3198728dc60bfde163c25cf4b.xml/MD5E-s332125--f664dbe3198728dc60bfde163c25cf4b.xml

KKI/sub-0050821/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050821_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

KKI/sub-0050821/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050821_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M1/27/MD5E-s184318--6302880dd6407aefe7ed1f1867cc567f.nii.gz/MD5E-s184318--6302880dd6407aefe7ed1f1867cc567f.nii.gz

KKI/sub-0050821/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050821_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

KKI/sub-0050821/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050821_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k3/ZM/MD5E-s205450--21133d85a8d7b909dac5c3aeb8690ee9.nii.gz/MD5E-s205450--21133d85a8d7b909dac5c3aeb8690ee9.nii.gz

KKI/sub-0050821/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050821_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

KKI/sub-0050821/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050821_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w2/w0/MD5E-s263775--bf6250ea7dbb0b9961969bdb89497d1a.nii.gz/MD5E-s263775--bf6250ea7dbb0b9961969bdb89497d1a.nii.gz

KKI/sub-0050821/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050821_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

KKI/sub-0050821/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050821_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pF/wM/MD5E-s293420--38e07c1f74cd494bea3aba7a597967da.nii.gz/MD5E-s293420--38e07c1f74cd494bea3aba7a597967da.nii.gz

KKI/sub-0050821/mri/Tian_Subcortex_S2_7T_sub-0050821_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

KKI/sub-0050821/mri/Tian_Subcortex_S2_7T_sub-0050821_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZZ/1q/MD5E-s27662--57e4660ca931772614a86b565bedca2f.nii.gz/MD5E-s27662--57e4660ca931772614a86b565bedca2f.nii.gz

KKI/sub-0050821/mri/aal3_sub-0050821_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

KKI/sub-0050821/mri/aal3_sub-0050821_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050821/mri/anatomy3_sub-0050821_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

KKI/sub-0050821/mri/anatomy3_sub-0050821_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6f/6x/MD5E-s149446--b34ba60d63eb764f8fd377f2846152a0.nii.gz/MD5E-s149446--b34ba60d63eb764f8fd377f2846152a0.nii.gz

KKI/sub-0050821/mri/anon_misub-0050821_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fv/Ff/MD5E-s4643451--a0a0044502c1cc5adf594cb570a19f56.nii.gz/MD5E-s4643451--a0a0044502c1cc5adf594cb570a19f56.nii.gz

KKI/sub-0050821/mri/anon_msub-0050821_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6K/z3/MD5E-s12280361--3ae5787a29e8a8b85c62c5852db2225e.nii.gz/MD5E-s12280361--3ae5787a29e8a8b85c62c5852db2225e.nii.gz

KKI/sub-0050821/mri/cat_sub-0050821_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VX/Zv/MD5E-s112843--b84a7b8fb9aebdef40c4650cb9b86797.nii.gz/MD5E-s112843--b84a7b8fb9aebdef40c4650cb9b86797.nii.gz

KKI/sub-0050821/mri/cobra_sub-0050821_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

KKI/sub-0050821/mri/cobra_sub-0050821_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050821/mri/hammers_sub-0050821_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

KKI/sub-0050821/mri/hammers_sub-0050821_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050821/mri/ibsr_sub-0050821_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

KKI/sub-0050821/mri/ibsr_sub-0050821_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9j/wq/MD5E-s166053--6a910ffaa9d1f44d3769f5c44520f861.nii.gz/MD5E-s166053--6a910ffaa9d1f44d3769f5c44520f861.nii.gz

KKI/sub-0050821/mri/it_sub-0050821_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/0k/wV/MD5E-s283--a25aee4d0aa0c478c2cb370f9bccf3c6.mat/MD5E-s283--a25aee4d0aa0c478c2cb370f9bccf3c6.mat

KKI/sub-0050821/mri/it_sub-0050821_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/1P/6j/MD5E-s282--225030766c8cafdc60088c95b10d4c3d.mat/MD5E-s282--225030766c8cafdc60088c95b10d4c3d.mat

KKI/sub-0050821/mri/iy_sub-0050821_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qZ/4z/MD5E-s44910343--634456da8530f50c50883dcdc4a1b006.nii.gz/MD5E-s44910343--634456da8530f50c50883dcdc4a1b006.nii.gz

KKI/sub-0050821/mri/julichbrain_sub-0050821_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

KKI/sub-0050821/mri/julichbrain_sub-0050821_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050821/mri/lpba40_sub-0050821_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

KKI/sub-0050821/mri/lpba40_sub-0050821_T1w.nii.gz

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KKI/sub-0050821/mri/m0wp1sub-0050821_T1w.nii.gz

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KKI/sub-0050821/mri/m0wp2sub-0050821_T1w.nii.gz

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KKI/sub-0050821/mri/m0wp3sub-0050821_T1w.nii.gz

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KKI/sub-0050821/mri/mori_sub-0050821_T1w.csv

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KKI/sub-0050821/mri/mori_sub-0050821_T1w.nii.gz

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KKI/sub-0050821/mri/mwp1sub-0050821_T1w.nii.gz

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KKI/sub-0050821/mri/mwp2sub-0050821_T1w.nii.gz

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KKI/sub-0050821/mri/mwp3sub-0050821_T1w.nii.gz

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KKI/sub-0050821/mri/neuromorphometrics_sub-0050821_T1w.csv

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KKI/sub-0050821/mri/neuromorphometrics_sub-0050821_T1w.nii.gz

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KKI/sub-0050821/mri/p0sub-0050821_T1w.nii.gz

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KKI/sub-0050821/mri/p1sub-0050821_T1w.nii.gz

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KKI/sub-0050821/mri/p2sub-0050821_T1w.nii.gz

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KKI/sub-0050821/mri/p3sub-0050821_T1w.nii.gz

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KKI/sub-0050821/mri/rp1sub-0050821_T1w_affine.nii.gz

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KKI/sub-0050821/mri/rp2sub-0050821_T1w_affine.nii.gz

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KKI/sub-0050821/mri/rp3sub-0050821_T1w_affine.nii.gz

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KKI/sub-0050821/mri/t_sub-0050821_T1w_affine_reorient.mat

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KKI/sub-0050821/mri/t_sub-0050821_T1w_rigid_reorient.mat

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KKI/sub-0050821/mri/thalamus_sub-0050821_T1w.csv

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KKI/sub-0050821/mri/thalamus_sub-0050821_T1w.nii.gz

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KKI/sub-0050821/mri/wj_sub-0050821_T1w.nii.gz

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KKI/sub-0050821/mri/wmisub-0050821_T1w.nii.gz

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KKI/sub-0050821/mri/wmsub-0050821_T1w.nii.gz

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KKI/sub-0050821/mri/wp0sub-0050821_T1w.nii.gz

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KKI/sub-0050821/mri/wp1sub-0050821_T1w.nii.gz

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KKI/sub-0050821/mri/wp2sub-0050821_T1w.nii.gz

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