[DATALAD RUNCMD] Compute Pitt/sub-0050049

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Pitt/sub-0050049/anat/sub-0050049_T1w.nii.gz"
 ],
 "outputs": [
  "Pitt/sub-0050049"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Pitt/sub-0050049/label/catROI_sub-0050049_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/PJ/7p/MD5E-s61229--6f6d47eb01ff2df6aaacf0dcaef94f19.mat/MD5E-s61229--6f6d47eb01ff2df6aaacf0dcaef94f19.mat

Pitt/sub-0050049/label/catROI_sub-0050049_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/79/5p/MD5E-s188910--33c65197e3874d5dc58d81fca8b9a21b.xml/MD5E-s188910--33c65197e3874d5dc58d81fca8b9a21b.xml

Pitt/sub-0050049/label/catROIs_sub-0050049_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/2x/pX/MD5E-s120200--ad88b9162001096d370737d2ee869b37.mat/MD5E-s120200--ad88b9162001096d370737d2ee869b37.mat

Pitt/sub-0050049/label/catROIs_sub-0050049_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/1j/K7/MD5E-s332107--87d5ad84579cf3e21be51a03a034b074.xml/MD5E-s332107--87d5ad84579cf3e21be51a03a034b074.xml

Pitt/sub-0050049/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050049_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Pitt/sub-0050049/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050049_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wk/Z7/MD5E-s140688--d3855b044227787ca28c6017fdb10068.nii.gz/MD5E-s140688--d3855b044227787ca28c6017fdb10068.nii.gz

Pitt/sub-0050049/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050049_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Pitt/sub-0050049/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050049_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gg/zq/MD5E-s159551--70c5120226758b4bbb7966beae448132.nii.gz/MD5E-s159551--70c5120226758b4bbb7966beae448132.nii.gz

Pitt/sub-0050049/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050049_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Pitt/sub-0050049/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050049_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vF/56/MD5E-s214502--894ffc6f4ade3bea149241c702e593db.nii.gz/MD5E-s214502--894ffc6f4ade3bea149241c702e593db.nii.gz

Pitt/sub-0050049/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050049_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Pitt/sub-0050049/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050049_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K9/10/MD5E-s238766--fb7a12ec7faf4cb3534c3d55aef459f3.nii.gz/MD5E-s238766--fb7a12ec7faf4cb3534c3d55aef459f3.nii.gz

Pitt/sub-0050049/mri/Tian_Subcortex_S2_7T_sub-0050049_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Pitt/sub-0050049/mri/Tian_Subcortex_S2_7T_sub-0050049_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xp/x3/MD5E-s23785--35209d5cb3a69aecca8005ee9d2b48b2.nii.gz/MD5E-s23785--35209d5cb3a69aecca8005ee9d2b48b2.nii.gz

Pitt/sub-0050049/mri/aal3_sub-0050049_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Pitt/sub-0050049/mri/aal3_sub-0050049_T1w.nii.gz

@@ -0,0 +1 @@
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Pitt/sub-0050049/mri/anatomy3_sub-0050049_T1w.csv

@@ -0,0 +1 @@
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Pitt/sub-0050049/mri/anatomy3_sub-0050049_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pF/Xm/MD5E-s118430--fc8f7efec2f134a5fb50ec7e4c680bcc.nii.gz/MD5E-s118430--fc8f7efec2f134a5fb50ec7e4c680bcc.nii.gz

Pitt/sub-0050049/mri/anon_misub-0050049_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5v/mX/MD5E-s10300477--66f46e28f407748b475f0d9a31ff7347.nii.gz/MD5E-s10300477--66f46e28f407748b475f0d9a31ff7347.nii.gz

Pitt/sub-0050049/mri/anon_msub-0050049_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kp/w2/MD5E-s8362525--86dfcfd1608a565486a3a25c64725e9e.nii.gz/MD5E-s8362525--86dfcfd1608a565486a3a25c64725e9e.nii.gz

Pitt/sub-0050049/mri/cat_sub-0050049_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pP/Q7/MD5E-s85335--8df7bed417643bfb56e70cc9fca00ca8.nii.gz/MD5E-s85335--8df7bed417643bfb56e70cc9fca00ca8.nii.gz

Pitt/sub-0050049/mri/cobra_sub-0050049_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Pitt/sub-0050049/mri/cobra_sub-0050049_T1w.nii.gz

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Pitt/sub-0050049/mri/hammers_sub-0050049_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Pitt/sub-0050049/mri/hammers_sub-0050049_T1w.nii.gz

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Pitt/sub-0050049/mri/ibsr_sub-0050049_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Pitt/sub-0050049/mri/ibsr_sub-0050049_T1w.nii.gz

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+../../../.git/annex/objects/Wx/FQ/MD5E-s133438--b6202d722f875f191b62f1e498048dc2.nii.gz/MD5E-s133438--b6202d722f875f191b62f1e498048dc2.nii.gz

Pitt/sub-0050049/mri/it_sub-0050049_T1w_affine_reorient.mat

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+../../../.git/annex/objects/70/gP/MD5E-s283--f08335589bd6be9b4797edbd1610b636.mat/MD5E-s283--f08335589bd6be9b4797edbd1610b636.mat

Pitt/sub-0050049/mri/it_sub-0050049_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/gj/jJ/MD5E-s284--19eb152e5a005dd39a3052fcf46b1e68.mat/MD5E-s284--19eb152e5a005dd39a3052fcf46b1e68.mat

Pitt/sub-0050049/mri/iy_sub-0050049_T1w.nii.gz

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+../../../.git/annex/objects/pm/vk/MD5E-s34726561--f43aa166a626b7fe86a29406a37428f8.nii.gz/MD5E-s34726561--f43aa166a626b7fe86a29406a37428f8.nii.gz

Pitt/sub-0050049/mri/julichbrain_sub-0050049_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Pitt/sub-0050049/mri/julichbrain_sub-0050049_T1w.nii.gz

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Pitt/sub-0050049/mri/lpba40_sub-0050049_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Pitt/sub-0050049/mri/lpba40_sub-0050049_T1w.nii.gz

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Pitt/sub-0050049/mri/m0wp1sub-0050049_T1w.nii.gz

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Pitt/sub-0050049/mri/m0wp2sub-0050049_T1w.nii.gz

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Pitt/sub-0050049/mri/m0wp3sub-0050049_T1w.nii.gz

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Pitt/sub-0050049/mri/mori_sub-0050049_T1w.csv

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Pitt/sub-0050049/mri/mori_sub-0050049_T1w.nii.gz

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Pitt/sub-0050049/mri/mwp1sub-0050049_T1w.nii.gz

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Pitt/sub-0050049/mri/mwp2sub-0050049_T1w.nii.gz

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Pitt/sub-0050049/mri/mwp3sub-0050049_T1w.nii.gz

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Pitt/sub-0050049/mri/neuromorphometrics_sub-0050049_T1w.csv

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Pitt/sub-0050049/mri/neuromorphometrics_sub-0050049_T1w.nii.gz

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Pitt/sub-0050049/mri/p0sub-0050049_T1w.nii.gz

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Pitt/sub-0050049/mri/p1sub-0050049_T1w.nii.gz

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Pitt/sub-0050049/mri/p2sub-0050049_T1w.nii.gz

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Pitt/sub-0050049/mri/p3sub-0050049_T1w.nii.gz

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Pitt/sub-0050049/mri/rp1sub-0050049_T1w_affine.nii.gz

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Pitt/sub-0050049/mri/rp2sub-0050049_T1w_affine.nii.gz

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Pitt/sub-0050049/mri/rp3sub-0050049_T1w_affine.nii.gz

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Pitt/sub-0050049/mri/t_sub-0050049_T1w_affine_reorient.mat

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Pitt/sub-0050049/mri/t_sub-0050049_T1w_rigid_reorient.mat

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Pitt/sub-0050049/mri/thalamus_sub-0050049_T1w.csv

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Pitt/sub-0050049/mri/thalamus_sub-0050049_T1w.nii.gz

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Pitt/sub-0050049/mri/wj_sub-0050049_T1w.nii.gz

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Pitt/sub-0050049/mri/wmisub-0050049_T1w.nii.gz

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Pitt/sub-0050049/mri/wmsub-0050049_T1w.nii.gz

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Pitt/sub-0050049/mri/wp0sub-0050049_T1w.nii.gz

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Pitt/sub-0050049/mri/wp1sub-0050049_T1w.nii.gz

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Pitt/sub-0050049/mri/wp2sub-0050049_T1w.nii.gz

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