[DATALAD RUNCMD] Compute Olin/sub-0050136

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Olin/sub-0050136/anat/sub-0050136_T1w.nii.gz"
 ],
 "outputs": [
  "Olin/sub-0050136"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Olin/sub-0050136/label/catROI_sub-0050136_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/62/Z0/MD5E-s61416--cb83cfa84e86d43a4b173a102598bef1.mat/MD5E-s61416--cb83cfa84e86d43a4b173a102598bef1.mat

Olin/sub-0050136/label/catROI_sub-0050136_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/f2/fX/MD5E-s188420--684e666d931f53e4517be5eff2238b25.xml/MD5E-s188420--684e666d931f53e4517be5eff2238b25.xml

Olin/sub-0050136/label/catROIs_sub-0050136_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/K4/xm/MD5E-s120185--0a77441b4e2044b4a93626d3ca6f7133.mat/MD5E-s120185--0a77441b4e2044b4a93626d3ca6f7133.mat

Olin/sub-0050136/label/catROIs_sub-0050136_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/j3/VG/MD5E-s332201--06d70639e9189d4953d5a64ce389cee1.xml/MD5E-s332201--06d70639e9189d4953d5a64ce389cee1.xml

Olin/sub-0050136/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050136_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Olin/sub-0050136/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050136_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1g/WZ/MD5E-s208918--a3f65979721582270a2866205b029744.nii.gz/MD5E-s208918--a3f65979721582270a2866205b029744.nii.gz

Olin/sub-0050136/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050136_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Olin/sub-0050136/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050136_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qv/Fq/MD5E-s236662--35d106d5c71efc5831532418034827ab.nii.gz/MD5E-s236662--35d106d5c71efc5831532418034827ab.nii.gz

Olin/sub-0050136/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050136_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Olin/sub-0050136/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050136_T1w.nii.gz

@@ -0,0 +1 @@
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Olin/sub-0050136/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050136_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Olin/sub-0050136/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050136_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JX/Z0/MD5E-s340077--7051106976fa5fc492495f68f8f2dff4.nii.gz/MD5E-s340077--7051106976fa5fc492495f68f8f2dff4.nii.gz

Olin/sub-0050136/mri/Tian_Subcortex_S2_7T_sub-0050136_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Olin/sub-0050136/mri/Tian_Subcortex_S2_7T_sub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/aal3_sub-0050136_T1w.csv

@@ -0,0 +1 @@
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Olin/sub-0050136/mri/aal3_sub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/anatomy3_sub-0050136_T1w.csv

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Olin/sub-0050136/mri/anatomy3_sub-0050136_T1w.nii.gz

@@ -0,0 +1 @@
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Olin/sub-0050136/mri/anon_misub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/anon_msub-0050136_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M9/Zp/MD5E-s10908651--1dbf4407b2fb160045577e8b25d30843.nii.gz/MD5E-s10908651--1dbf4407b2fb160045577e8b25d30843.nii.gz

Olin/sub-0050136/mri/cat_sub-0050136_T1w.nii.gz

@@ -0,0 +1 @@
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Olin/sub-0050136/mri/cobra_sub-0050136_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Olin/sub-0050136/mri/cobra_sub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/hammers_sub-0050136_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Olin/sub-0050136/mri/hammers_sub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/ibsr_sub-0050136_T1w.csv

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Olin/sub-0050136/mri/ibsr_sub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/it_sub-0050136_T1w_affine_reorient.mat

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Olin/sub-0050136/mri/it_sub-0050136_T1w_rigid_reorient.mat

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Olin/sub-0050136/mri/iy_sub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/julichbrain_sub-0050136_T1w.csv

@@ -0,0 +1 @@
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Olin/sub-0050136/mri/julichbrain_sub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/lpba40_sub-0050136_T1w.csv

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Olin/sub-0050136/mri/lpba40_sub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/m0wp1sub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/m0wp2sub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/m0wp3sub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/mori_sub-0050136_T1w.csv

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Olin/sub-0050136/mri/mori_sub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/mwp1sub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/mwp2sub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/mwp3sub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/neuromorphometrics_sub-0050136_T1w.csv

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Olin/sub-0050136/mri/neuromorphometrics_sub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/p0sub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/p1sub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/p2sub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/p3sub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/rp1sub-0050136_T1w_affine.nii.gz

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Olin/sub-0050136/mri/rp2sub-0050136_T1w_affine.nii.gz

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Olin/sub-0050136/mri/rp3sub-0050136_T1w_affine.nii.gz

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Olin/sub-0050136/mri/t_sub-0050136_T1w_affine_reorient.mat

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Olin/sub-0050136/mri/t_sub-0050136_T1w_rigid_reorient.mat

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Olin/sub-0050136/mri/thalamus_sub-0050136_T1w.csv

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Olin/sub-0050136/mri/thalamus_sub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/wj_sub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/wmisub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/wmsub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/wp0sub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/wp1sub-0050136_T1w.nii.gz

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Olin/sub-0050136/mri/wp2sub-0050136_T1w.nii.gz

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