[DATALAD RUNCMD] Compute USM/sub-0050508

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050508/anat/sub-0050508_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050508"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050508/label/catROI_sub-0050508_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/f2/kX/MD5E-s61440--26136f25acb535d16d84262b60f1beec.mat/MD5E-s61440--26136f25acb535d16d84262b60f1beec.mat

USM/sub-0050508/label/catROI_sub-0050508_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/F0/4m/MD5E-s189168--53ed418b41036bf17c42d8bff270531b.xml/MD5E-s189168--53ed418b41036bf17c42d8bff270531b.xml

USM/sub-0050508/label/catROIs_sub-0050508_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/97/QP/MD5E-s120182--0f75f03cde43614fe1a4a9b2aa6f7d7c.mat/MD5E-s120182--0f75f03cde43614fe1a4a9b2aa6f7d7c.mat

USM/sub-0050508/label/catROIs_sub-0050508_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/vj/5f/MD5E-s332233--7fd2771cbec5decd545bd34c7c683bc4.xml/MD5E-s332233--7fd2771cbec5decd545bd34c7c683bc4.xml

USM/sub-0050508/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050508_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050508/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z6/k1/MD5E-s398974--95b1ecfc9e1a5aa70ff614f7e6d13f26.nii.gz/MD5E-s398974--95b1ecfc9e1a5aa70ff614f7e6d13f26.nii.gz

USM/sub-0050508/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050508_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050508/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wg/fV/MD5E-s444899--02a0a2a18020e901930c0cbed75a1580.nii.gz/MD5E-s444899--02a0a2a18020e901930c0cbed75a1580.nii.gz

USM/sub-0050508/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050508_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050508/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mv/p1/MD5E-s640498--1294cd71b09582872f117642cfb3abb0.nii.gz/MD5E-s640498--1294cd71b09582872f117642cfb3abb0.nii.gz

USM/sub-0050508/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050508_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050508/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7M/41/MD5E-s703947--e9646bf68d16b35427e00ec91d5d6044.nii.gz/MD5E-s703947--e9646bf68d16b35427e00ec91d5d6044.nii.gz

USM/sub-0050508/mri/Tian_Subcortex_S2_7T_sub-0050508_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050508/mri/Tian_Subcortex_S2_7T_sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MK/xx/MD5E-s69986--a16fe3c53610e53217fde2abc71b0119.nii.gz/MD5E-s69986--a16fe3c53610e53217fde2abc71b0119.nii.gz

USM/sub-0050508/mri/aal3_sub-0050508_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050508/mri/aal3_sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j2/Ww/MD5E-s445490--35d5e5ca37e66651f716c065b3ae3dfc.nii.gz/MD5E-s445490--35d5e5ca37e66651f716c065b3ae3dfc.nii.gz

USM/sub-0050508/mri/anatomy3_sub-0050508_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050508/mri/anatomy3_sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8Q/VX/MD5E-s333862--6410fc0492f5a7fbfd5305fcb17beff2.nii.gz/MD5E-s333862--6410fc0492f5a7fbfd5305fcb17beff2.nii.gz

USM/sub-0050508/mri/anon_misub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4M/wK/MD5E-s19363314--abb1adf9b68fd12f3ef6ba38a65a0fcb.nii.gz/MD5E-s19363314--abb1adf9b68fd12f3ef6ba38a65a0fcb.nii.gz

USM/sub-0050508/mri/anon_msub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/31/xK/MD5E-s33295237--e6a36bf4f6360c9ade668b54e1ba573a.nii.gz/MD5E-s33295237--e6a36bf4f6360c9ade668b54e1ba573a.nii.gz

USM/sub-0050508/mri/cat_sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gf/WQ/MD5E-s265032--4bbadcea49127ad1136898c931935a98.nii.gz/MD5E-s265032--4bbadcea49127ad1136898c931935a98.nii.gz

USM/sub-0050508/mri/cobra_sub-0050508_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050508/mri/cobra_sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3x/GQ/MD5E-s122612--9b363a670621e3f76d8cacb7f70c3e07.nii.gz/MD5E-s122612--9b363a670621e3f76d8cacb7f70c3e07.nii.gz

USM/sub-0050508/mri/hammers_sub-0050508_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050508/mri/hammers_sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qq/81/MD5E-s357365--d8617b91e33d4fce9147ed4d50fa8369.nii.gz/MD5E-s357365--d8617b91e33d4fce9147ed4d50fa8369.nii.gz

USM/sub-0050508/mri/ibsr_sub-0050508_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050508/mri/ibsr_sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fp/gf/MD5E-s383376--c28ca2d27afaa1ab916fb1506f113b4a.nii.gz/MD5E-s383376--c28ca2d27afaa1ab916fb1506f113b4a.nii.gz

USM/sub-0050508/mri/it_sub-0050508_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/fF/KF/MD5E-s284--a794c3b7b96e5ec1057c58b27a5cb139.mat/MD5E-s284--a794c3b7b96e5ec1057c58b27a5cb139.mat

USM/sub-0050508/mri/it_sub-0050508_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/fP/Xk/MD5E-s284--deebcb2e4b64b096263be971b023d4b1.mat/MD5E-s284--deebcb2e4b64b096263be971b023d4b1.mat

USM/sub-0050508/mri/iy_sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G4/Gz/MD5E-s160552656--f6f357803211d1f00aac025eabe5fe75.nii.gz/MD5E-s160552656--f6f357803211d1f00aac025eabe5fe75.nii.gz

USM/sub-0050508/mri/julichbrain_sub-0050508_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050508/mri/julichbrain_sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MX/kz/MD5E-s471965--a9fd6d9f1db1f057f8f67eff89a1c12b.nii.gz/MD5E-s471965--a9fd6d9f1db1f057f8f67eff89a1c12b.nii.gz

USM/sub-0050508/mri/lpba40_sub-0050508_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050508/mri/lpba40_sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mj/6v/MD5E-s352243--e6bf278e0321f6db53d9863d5ef03259.nii.gz/MD5E-s352243--e6bf278e0321f6db53d9863d5ef03259.nii.gz

USM/sub-0050508/mri/m0wp1sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/66/3X/MD5E-s2583079--38556649b8d89a4d2ed8f9695c74da17.nii.gz/MD5E-s2583079--38556649b8d89a4d2ed8f9695c74da17.nii.gz

USM/sub-0050508/mri/m0wp2sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z6/mg/MD5E-s2290093--bd8b5fd42124f3247c7ab9b662b482e4.nii.gz/MD5E-s2290093--bd8b5fd42124f3247c7ab9b662b482e4.nii.gz

USM/sub-0050508/mri/m0wp3sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pj/QK/MD5E-s2578460--878d4c709cffc0948a0a6d71b436845c.nii.gz/MD5E-s2578460--878d4c709cffc0948a0a6d71b436845c.nii.gz

USM/sub-0050508/mri/mori_sub-0050508_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

USM/sub-0050508/mri/mori_sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050508/mri/mwp1sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wx/WV/MD5E-s2586508--839c31aba7219e3fd813c9e6a5ae1b31.nii.gz/MD5E-s2586508--839c31aba7219e3fd813c9e6a5ae1b31.nii.gz

USM/sub-0050508/mri/mwp2sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050508/mri/mwp3sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FZ/g4/MD5E-s2578681--01948ef38548aa31a331aadf371d570c.nii.gz/MD5E-s2578681--01948ef38548aa31a331aadf371d570c.nii.gz

USM/sub-0050508/mri/neuromorphometrics_sub-0050508_T1w.csv

@@ -0,0 +1 @@
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USM/sub-0050508/mri/neuromorphometrics_sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050508/mri/p0sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050508/mri/p1sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z2/Xv/MD5E-s3985790--cf9e23dd98c402f2ab1cd0590c20a64a.nii.gz/MD5E-s3985790--cf9e23dd98c402f2ab1cd0590c20a64a.nii.gz

USM/sub-0050508/mri/p2sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050508/mri/p3sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050508/mri/rp1sub-0050508_T1w_affine.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050508/mri/rp2sub-0050508_T1w_affine.nii.gz

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+../../../.git/annex/objects/Gm/ZQ/MD5E-s294664--bcc9ea37c885ff5b90a03e88d1289d86.nii.gz/MD5E-s294664--bcc9ea37c885ff5b90a03e88d1289d86.nii.gz

USM/sub-0050508/mri/rp3sub-0050508_T1w_affine.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050508/mri/t_sub-0050508_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/01/fX/MD5E-s284--355bf25437389ee9f38c9853907ee90c.mat/MD5E-s284--355bf25437389ee9f38c9853907ee90c.mat

USM/sub-0050508/mri/t_sub-0050508_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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USM/sub-0050508/mri/thalamus_sub-0050508_T1w.csv

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USM/sub-0050508/mri/thalamus_sub-0050508_T1w.nii.gz

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USM/sub-0050508/mri/wj_sub-0050508_T1w.nii.gz

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USM/sub-0050508/mri/wmisub-0050508_T1w.nii.gz

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USM/sub-0050508/mri/wmsub-0050508_T1w.nii.gz

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USM/sub-0050508/mri/wp0sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050508/mri/wp1sub-0050508_T1w.nii.gz

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USM/sub-0050508/mri/wp2sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050508/mri/wp3sub-0050508_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050508/mri/y_sub-0050508_T1w.nii.gz

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