[DATALAD RUNCMD] Compute MaxMun_c/sub-0051342

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/MaxMun_c/sub-0051342/anat/sub-0051342_T1w.nii.gz"
 ],
 "outputs": [
  "MaxMun_c/sub-0051342"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MaxMun_c/sub-0051342/label/catROI_sub-0051342_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/6m/wm/MD5E-s57946--9712dbee9d2fe64fe9499aa078bc0517.mat/MD5E-s57946--9712dbee9d2fe64fe9499aa078bc0517.mat

MaxMun_c/sub-0051342/label/catROI_sub-0051342_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/7z/QV/MD5E-s188740--81d75e151ae73dbbbd2bc38f6ec1d638.xml/MD5E-s188740--81d75e151ae73dbbbd2bc38f6ec1d638.xml

MaxMun_c/sub-0051342/label/catROIs_sub-0051342_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/2J/G8/MD5E-s120124--11f826d62e16b307241492af3fbf661b.mat/MD5E-s120124--11f826d62e16b307241492af3fbf661b.mat

MaxMun_c/sub-0051342/label/catROIs_sub-0051342_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/f2/jM/MD5E-s332122--ff6b013ea30e70541332d8f0a876bf57.xml/MD5E-s332122--ff6b013ea30e70541332d8f0a876bf57.xml

MaxMun_c/sub-0051342/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051342_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MaxMun_c/sub-0051342/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051342_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qf/gW/MD5E-s169485--52af08e93b5fe6f636f711bd5d215022.nii.gz/MD5E-s169485--52af08e93b5fe6f636f711bd5d215022.nii.gz

MaxMun_c/sub-0051342/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051342_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MaxMun_c/sub-0051342/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051342_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/10/MD5E-s189260--8844fa71d631e8a0fefddd8b78f55041.nii.gz/MD5E-s189260--8844fa71d631e8a0fefddd8b78f55041.nii.gz

MaxMun_c/sub-0051342/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051342_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MaxMun_c/sub-0051342/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051342_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mv/FV/MD5E-s256272--db7a514ad36e1edf198bc2988798a02c.nii.gz/MD5E-s256272--db7a514ad36e1edf198bc2988798a02c.nii.gz

MaxMun_c/sub-0051342/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051342_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MaxMun_c/sub-0051342/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051342_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pv/z5/MD5E-s283388--8f92e757111bccd1047b0ebfaa599228.nii.gz/MD5E-s283388--8f92e757111bccd1047b0ebfaa599228.nii.gz

MaxMun_c/sub-0051342/mri/Tian_Subcortex_S2_7T_sub-0051342_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MaxMun_c/sub-0051342/mri/Tian_Subcortex_S2_7T_sub-0051342_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gv/3M/MD5E-s22646--ec3c80a20cd4db03402433c71d55d8e3.nii.gz/MD5E-s22646--ec3c80a20cd4db03402433c71d55d8e3.nii.gz

MaxMun_c/sub-0051342/mri/aal3_sub-0051342_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

MaxMun_c/sub-0051342/mri/aal3_sub-0051342_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051342/mri/anatomy3_sub-0051342_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

MaxMun_c/sub-0051342/mri/anatomy3_sub-0051342_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051342/mri/anon_misub-0051342_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M5/Fg/MD5E-s7623766--dd09765f6e3fb1c1020e334d94e3cf19.nii.gz/MD5E-s7623766--dd09765f6e3fb1c1020e334d94e3cf19.nii.gz

MaxMun_c/sub-0051342/mri/anon_msub-0051342_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qf/wQ/MD5E-s8746503--b73d24f6a9cb76a5450340e4d845ad9f.nii.gz/MD5E-s8746503--b73d24f6a9cb76a5450340e4d845ad9f.nii.gz

MaxMun_c/sub-0051342/mri/cat_sub-0051342_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8G/q7/MD5E-s100324--a7c1f76ac7054ffa9c2842ae466d242a.nii.gz/MD5E-s100324--a7c1f76ac7054ffa9c2842ae466d242a.nii.gz

MaxMun_c/sub-0051342/mri/cobra_sub-0051342_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MaxMun_c/sub-0051342/mri/cobra_sub-0051342_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/64/xg/MD5E-s47558--ae647a6655e25a034eb2206f3c61ac3b.nii.gz/MD5E-s47558--ae647a6655e25a034eb2206f3c61ac3b.nii.gz

MaxMun_c/sub-0051342/mri/hammers_sub-0051342_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MaxMun_c/sub-0051342/mri/hammers_sub-0051342_T1w.nii.gz

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+../../../.git/annex/objects/qm/JZ/MD5E-s150927--c7b19feb57a75318af2834312978a702.nii.gz/MD5E-s150927--c7b19feb57a75318af2834312978a702.nii.gz

MaxMun_c/sub-0051342/mri/ibsr_sub-0051342_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MaxMun_c/sub-0051342/mri/ibsr_sub-0051342_T1w.nii.gz

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MaxMun_c/sub-0051342/mri/it_sub-0051342_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/qV/KV/MD5E-s283--62c0d6f941fb9262fe3831285aad755b.mat/MD5E-s283--62c0d6f941fb9262fe3831285aad755b.mat

MaxMun_c/sub-0051342/mri/it_sub-0051342_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qm/Q2/MD5E-s282--b95a8d7663af9dab8ab178cca92422a8.mat/MD5E-s282--b95a8d7663af9dab8ab178cca92422a8.mat

MaxMun_c/sub-0051342/mri/iy_sub-0051342_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9J/61/MD5E-s47626490--a2a99040c46aaa87c2f15311e9886c7f.nii.gz/MD5E-s47626490--a2a99040c46aaa87c2f15311e9886c7f.nii.gz

MaxMun_c/sub-0051342/mri/julichbrain_sub-0051342_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

MaxMun_c/sub-0051342/mri/julichbrain_sub-0051342_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wk/XQ/MD5E-s205258--ce4a0cb76ad347af8e00a0b3a6698887.nii.gz/MD5E-s205258--ce4a0cb76ad347af8e00a0b3a6698887.nii.gz

MaxMun_c/sub-0051342/mri/lpba40_sub-0051342_T1w.csv

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MaxMun_c/sub-0051342/mri/lpba40_sub-0051342_T1w.nii.gz

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MaxMun_c/sub-0051342/mri/m0wp1sub-0051342_T1w.nii.gz

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MaxMun_c/sub-0051342/mri/m0wp2sub-0051342_T1w.nii.gz

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MaxMun_c/sub-0051342/mri/m0wp3sub-0051342_T1w.nii.gz

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MaxMun_c/sub-0051342/mri/mori_sub-0051342_T1w.csv

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MaxMun_c/sub-0051342/mri/mori_sub-0051342_T1w.nii.gz

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MaxMun_c/sub-0051342/mri/mwp1sub-0051342_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051342/mri/mwp2sub-0051342_T1w.nii.gz

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MaxMun_c/sub-0051342/mri/mwp3sub-0051342_T1w.nii.gz

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MaxMun_c/sub-0051342/mri/neuromorphometrics_sub-0051342_T1w.csv

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MaxMun_c/sub-0051342/mri/neuromorphometrics_sub-0051342_T1w.nii.gz

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MaxMun_c/sub-0051342/mri/p0sub-0051342_T1w.nii.gz

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MaxMun_c/sub-0051342/mri/p1sub-0051342_T1w.nii.gz

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MaxMun_c/sub-0051342/mri/p2sub-0051342_T1w.nii.gz

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MaxMun_c/sub-0051342/mri/p3sub-0051342_T1w.nii.gz

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MaxMun_c/sub-0051342/mri/rp1sub-0051342_T1w_affine.nii.gz

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MaxMun_c/sub-0051342/mri/rp2sub-0051342_T1w_affine.nii.gz

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MaxMun_c/sub-0051342/mri/rp3sub-0051342_T1w_affine.nii.gz

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MaxMun_c/sub-0051342/mri/t_sub-0051342_T1w_affine_reorient.mat

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MaxMun_c/sub-0051342/mri/t_sub-0051342_T1w_rigid_reorient.mat

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MaxMun_c/sub-0051342/mri/thalamus_sub-0051342_T1w.csv

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MaxMun_c/sub-0051342/mri/thalamus_sub-0051342_T1w.nii.gz

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MaxMun_c/sub-0051342/mri/wj_sub-0051342_T1w.nii.gz

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MaxMun_c/sub-0051342/mri/wmisub-0051342_T1w.nii.gz

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MaxMun_c/sub-0051342/mri/wmsub-0051342_T1w.nii.gz

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MaxMun_c/sub-0051342/mri/wp0sub-0051342_T1w.nii.gz

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MaxMun_c/sub-0051342/mri/wp1sub-0051342_T1w.nii.gz

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MaxMun_c/sub-0051342/mri/wp2sub-0051342_T1w.nii.gz

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