[DATALAD RUNCMD] Compute MaxMun_c/sub-0051335

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/MaxMun_c/sub-0051335/anat/sub-0051335_T1w.nii.gz"
 ],
 "outputs": [
  "MaxMun_c/sub-0051335"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MaxMun_c/sub-0051335/label/catROI_sub-0051335_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/xX/24/MD5E-s58885--b83ef8fd9360865c47484a6aafbdc1b7.mat/MD5E-s58885--b83ef8fd9360865c47484a6aafbdc1b7.mat

MaxMun_c/sub-0051335/label/catROI_sub-0051335_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/4J/p6/MD5E-s189154--423f998443232691ebea903e8dffe5dd.xml/MD5E-s189154--423f998443232691ebea903e8dffe5dd.xml

MaxMun_c/sub-0051335/label/catROIs_sub-0051335_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZW/mm/MD5E-s120211--5eaccb0591f5acce886f5ca480ffefe0.mat/MD5E-s120211--5eaccb0591f5acce886f5ca480ffefe0.mat

MaxMun_c/sub-0051335/label/catROIs_sub-0051335_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z8/Vx/MD5E-s332120--d8657d944dbf060f9ad319145d253537.xml/MD5E-s332120--d8657d944dbf060f9ad319145d253537.xml

MaxMun_c/sub-0051335/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051335_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MaxMun_c/sub-0051335/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6g/54/MD5E-s166972--f8995d456acb594dbca063622dfca287.nii.gz/MD5E-s166972--f8995d456acb594dbca063622dfca287.nii.gz

MaxMun_c/sub-0051335/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051335_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MaxMun_c/sub-0051335/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z1/pF/MD5E-s187782--2b79a8f9c46163b71c97ca0a94157bff.nii.gz/MD5E-s187782--2b79a8f9c46163b71c97ca0a94157bff.nii.gz

MaxMun_c/sub-0051335/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051335_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MaxMun_c/sub-0051335/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GX/1w/MD5E-s255895--b68d2d5a27341b364d1f36b43f01dfe5.nii.gz/MD5E-s255895--b68d2d5a27341b364d1f36b43f01dfe5.nii.gz

MaxMun_c/sub-0051335/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051335_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MaxMun_c/sub-0051335/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x2/pg/MD5E-s283158--e4448d1b12a5b58458735cbebb4bdafa.nii.gz/MD5E-s283158--e4448d1b12a5b58458735cbebb4bdafa.nii.gz

MaxMun_c/sub-0051335/mri/Tian_Subcortex_S2_7T_sub-0051335_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MaxMun_c/sub-0051335/mri/Tian_Subcortex_S2_7T_sub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X5/Jj/MD5E-s23527--f5cc94ca4821b6b111f81b3a868ae539.nii.gz/MD5E-s23527--f5cc94ca4821b6b111f81b3a868ae539.nii.gz

MaxMun_c/sub-0051335/mri/aal3_sub-0051335_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

MaxMun_c/sub-0051335/mri/aal3_sub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051335/mri/anatomy3_sub-0051335_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

MaxMun_c/sub-0051335/mri/anatomy3_sub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jv/9z/MD5E-s134869--dd00d19a9fbddecbcd161f173982f816.nii.gz/MD5E-s134869--dd00d19a9fbddecbcd161f173982f816.nii.gz

MaxMun_c/sub-0051335/mri/anon_misub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mF/26/MD5E-s7514082--5b83988a473f2776f9fe8980d0c8dc9a.nii.gz/MD5E-s7514082--5b83988a473f2776f9fe8980d0c8dc9a.nii.gz

MaxMun_c/sub-0051335/mri/anon_msub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/Km/MD5E-s7583371--7c9fd7e8287e214dd3e77b9358bd9c36.nii.gz/MD5E-s7583371--7c9fd7e8287e214dd3e77b9358bd9c36.nii.gz

MaxMun_c/sub-0051335/mri/cat_sub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w0/gV/MD5E-s105778--9a846458eb17e61b70ea76c34a56ef11.nii.gz/MD5E-s105778--9a846458eb17e61b70ea76c34a56ef11.nii.gz

MaxMun_c/sub-0051335/mri/cobra_sub-0051335_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MaxMun_c/sub-0051335/mri/cobra_sub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XJ/Zz/MD5E-s48248--e0f1d37d579f26bf07253624a7ec411e.nii.gz/MD5E-s48248--e0f1d37d579f26bf07253624a7ec411e.nii.gz

MaxMun_c/sub-0051335/mri/hammers_sub-0051335_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MaxMun_c/sub-0051335/mri/hammers_sub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9G/KZ/MD5E-s147709--27611dc0f60ba1d9f874ad6b24014aab.nii.gz/MD5E-s147709--27611dc0f60ba1d9f874ad6b24014aab.nii.gz

MaxMun_c/sub-0051335/mri/ibsr_sub-0051335_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MaxMun_c/sub-0051335/mri/ibsr_sub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mq/z0/MD5E-s156997--2f5b43cc6ed2a1d519ca58147d22e6ee.nii.gz/MD5E-s156997--2f5b43cc6ed2a1d519ca58147d22e6ee.nii.gz

MaxMun_c/sub-0051335/mri/it_sub-0051335_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/9p/Km/MD5E-s283--710217ff94d6b77aa7a2f53b71a67722.mat/MD5E-s283--710217ff94d6b77aa7a2f53b71a67722.mat

MaxMun_c/sub-0051335/mri/it_sub-0051335_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/j3/Qm/MD5E-s284--ba74d1c85463c738f60ac08b5ee31467.mat/MD5E-s284--ba74d1c85463c738f60ac08b5ee31467.mat

MaxMun_c/sub-0051335/mri/iy_sub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V6/qp/MD5E-s47779666--27155fa87831a2ae7763216bd861d058.nii.gz/MD5E-s47779666--27155fa87831a2ae7763216bd861d058.nii.gz

MaxMun_c/sub-0051335/mri/julichbrain_sub-0051335_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

MaxMun_c/sub-0051335/mri/julichbrain_sub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xG/Vg/MD5E-s199810--64d8b924ffaccda8b947a40b4bb37a82.nii.gz/MD5E-s199810--64d8b924ffaccda8b947a40b4bb37a82.nii.gz

MaxMun_c/sub-0051335/mri/lpba40_sub-0051335_T1w.csv

@@ -0,0 +1 @@
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MaxMun_c/sub-0051335/mri/lpba40_sub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051335/mri/m0wp1sub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051335/mri/m0wp2sub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4J/FJ/MD5E-s2435199--16b3cfa36194ac958b2fc5fdc3cf3a7e.nii.gz/MD5E-s2435199--16b3cfa36194ac958b2fc5fdc3cf3a7e.nii.gz

MaxMun_c/sub-0051335/mri/m0wp3sub-0051335_T1w.nii.gz

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MaxMun_c/sub-0051335/mri/mori_sub-0051335_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

MaxMun_c/sub-0051335/mri/mori_sub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051335/mri/mwp1sub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1Z/Wj/MD5E-s2573035--a5a46aa37b2c640fa3431df14822bc98.nii.gz/MD5E-s2573035--a5a46aa37b2c640fa3431df14822bc98.nii.gz

MaxMun_c/sub-0051335/mri/mwp2sub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051335/mri/mwp3sub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051335/mri/neuromorphometrics_sub-0051335_T1w.csv

@@ -0,0 +1 @@
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MaxMun_c/sub-0051335/mri/neuromorphometrics_sub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051335/mri/p0sub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/QQ/8w/MD5E-s656861--9a733f47a9f94503c02068a035b50538.nii.gz/MD5E-s656861--9a733f47a9f94503c02068a035b50538.nii.gz

MaxMun_c/sub-0051335/mri/p1sub-0051335_T1w.nii.gz

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MaxMun_c/sub-0051335/mri/p2sub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051335/mri/p3sub-0051335_T1w.nii.gz

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MaxMun_c/sub-0051335/mri/rp1sub-0051335_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pk/Vx/MD5E-s440147--65a551abdc4cdd7f17ffc5544732be3c.nii.gz/MD5E-s440147--65a551abdc4cdd7f17ffc5544732be3c.nii.gz

MaxMun_c/sub-0051335/mri/rp2sub-0051335_T1w_affine.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051335/mri/rp3sub-0051335_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pQ/v2/MD5E-s277606--40fa35264ee0c61cfd3fe6536a15f1eb.nii.gz/MD5E-s277606--40fa35264ee0c61cfd3fe6536a15f1eb.nii.gz

MaxMun_c/sub-0051335/mri/t_sub-0051335_T1w_affine_reorient.mat

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MaxMun_c/sub-0051335/mri/t_sub-0051335_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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MaxMun_c/sub-0051335/mri/thalamus_sub-0051335_T1w.csv

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MaxMun_c/sub-0051335/mri/thalamus_sub-0051335_T1w.nii.gz

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MaxMun_c/sub-0051335/mri/wj_sub-0051335_T1w.nii.gz

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MaxMun_c/sub-0051335/mri/wmisub-0051335_T1w.nii.gz

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MaxMun_c/sub-0051335/mri/wmsub-0051335_T1w.nii.gz

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MaxMun_c/sub-0051335/mri/wp0sub-0051335_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051335/mri/wp1sub-0051335_T1w.nii.gz

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MaxMun_c/sub-0051335/mri/wp2sub-0051335_T1w.nii.gz

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MaxMun_c/sub-0051335/report/catlog_sub-0051335_T1w.nii.txt

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