[DATALAD RUNCMD] Compute KKI/sub-0050808

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/KKI/sub-0050808/anat/sub-0050808_T1w.nii.gz"
 ],
 "outputs": [
  "KKI/sub-0050808"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

KKI/sub-0050808/label/catROI_sub-0050808_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/M6/6V/MD5E-s61422--4bd4337a09e0e3af779c777aa1bc9352.mat/MD5E-s61422--4bd4337a09e0e3af779c777aa1bc9352.mat

KKI/sub-0050808/label/catROI_sub-0050808_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/gp/mj/MD5E-s188822--1684b87dda4c14ef3f3ffe676f62af97.xml/MD5E-s188822--1684b87dda4c14ef3f3ffe676f62af97.xml

KKI/sub-0050808/label/catROIs_sub-0050808_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/J7/kq/MD5E-s120100--f9eda664d06b3210be80d0c922031387.mat/MD5E-s120100--f9eda664d06b3210be80d0c922031387.mat

KKI/sub-0050808/label/catROIs_sub-0050808_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/mg/7M/MD5E-s332060--cb5ae3150b1a2b19f4293dfba11d17bb.xml/MD5E-s332060--cb5ae3150b1a2b19f4293dfba11d17bb.xml

KKI/sub-0050808/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050808_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

KKI/sub-0050808/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wq/m4/MD5E-s195402--c84c08ba38ab8295cfb73c3649606c3b.nii.gz/MD5E-s195402--c84c08ba38ab8295cfb73c3649606c3b.nii.gz

KKI/sub-0050808/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050808_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

KKI/sub-0050808/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X5/Jm/MD5E-s219393--18955ac9b9c5021f93d581bcea5f045a.nii.gz/MD5E-s219393--18955ac9b9c5021f93d581bcea5f045a.nii.gz

KKI/sub-0050808/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050808_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

KKI/sub-0050808/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6V/Z0/MD5E-s278785--ac2786e9464a51fbb86381029eec4877.nii.gz/MD5E-s278785--ac2786e9464a51fbb86381029eec4877.nii.gz

KKI/sub-0050808/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050808_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

KKI/sub-0050808/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VX/xj/MD5E-s311088--b8a077487fa3bf54150ab363e225a9c3.nii.gz/MD5E-s311088--b8a077487fa3bf54150ab363e225a9c3.nii.gz

KKI/sub-0050808/mri/Tian_Subcortex_S2_7T_sub-0050808_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

KKI/sub-0050808/mri/Tian_Subcortex_S2_7T_sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZW/zk/MD5E-s27034--48fb4c52149d9749ee0bc372c20b9e50.nii.gz/MD5E-s27034--48fb4c52149d9749ee0bc372c20b9e50.nii.gz

KKI/sub-0050808/mri/aal3_sub-0050808_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

KKI/sub-0050808/mri/aal3_sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V5/f9/MD5E-s218420--dcb702e2861864e24161376b612d8fc8.nii.gz/MD5E-s218420--dcb702e2861864e24161376b612d8fc8.nii.gz

KKI/sub-0050808/mri/anatomy3_sub-0050808_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

KKI/sub-0050808/mri/anatomy3_sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x9/WW/MD5E-s159222--34b128aca598375c7abf366f4f1b38ea.nii.gz/MD5E-s159222--34b128aca598375c7abf366f4f1b38ea.nii.gz

KKI/sub-0050808/mri/anon_misub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q1/3q/MD5E-s4833026--3b3e386f53f73556ef3a4d42a30d6190.nii.gz/MD5E-s4833026--3b3e386f53f73556ef3a4d42a30d6190.nii.gz

KKI/sub-0050808/mri/anon_msub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/62/wQ/MD5E-s12220481--85f9bd5c0d4743dfc1e1e7e3d212c1dc.nii.gz/MD5E-s12220481--85f9bd5c0d4743dfc1e1e7e3d212c1dc.nii.gz

KKI/sub-0050808/mri/cat_sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9M/Zv/MD5E-s116062--dae3c24bf07f83c943bc16aae4c34e6d.nii.gz/MD5E-s116062--dae3c24bf07f83c943bc16aae4c34e6d.nii.gz

KKI/sub-0050808/mri/cobra_sub-0050808_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

KKI/sub-0050808/mri/cobra_sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MF/39/MD5E-s55864--e068fba91b4a6a1d111f3797a73b7870.nii.gz/MD5E-s55864--e068fba91b4a6a1d111f3797a73b7870.nii.gz

KKI/sub-0050808/mri/hammers_sub-0050808_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

KKI/sub-0050808/mri/hammers_sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G4/Z6/MD5E-s170823--9414c48164dfdf06fcd5784e2c8db0ad.nii.gz/MD5E-s170823--9414c48164dfdf06fcd5784e2c8db0ad.nii.gz

KKI/sub-0050808/mri/ibsr_sub-0050808_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

KKI/sub-0050808/mri/ibsr_sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pf/7Q/MD5E-s177303--e786495a02d44a554ab3c3920fae3d48.nii.gz/MD5E-s177303--e786495a02d44a554ab3c3920fae3d48.nii.gz

KKI/sub-0050808/mri/it_sub-0050808_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/vF/m3/MD5E-s283--a88748bc49348d4d0269015b3a5f9fbb.mat/MD5E-s283--a88748bc49348d4d0269015b3a5f9fbb.mat

KKI/sub-0050808/mri/it_sub-0050808_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/kw/kX/MD5E-s282--32d3af2d3600ec5eb645702c36c0651b.mat/MD5E-s282--32d3af2d3600ec5eb645702c36c0651b.mat

KKI/sub-0050808/mri/iy_sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0M/f1/MD5E-s46126177--90f7876619f0ac966a4bb0fd5136fff4.nii.gz/MD5E-s46126177--90f7876619f0ac966a4bb0fd5136fff4.nii.gz

KKI/sub-0050808/mri/julichbrain_sub-0050808_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

KKI/sub-0050808/mri/julichbrain_sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/86/pV/MD5E-s233532--5c979ca44789661dd1399b89a51c059e.nii.gz/MD5E-s233532--5c979ca44789661dd1399b89a51c059e.nii.gz

KKI/sub-0050808/mri/lpba40_sub-0050808_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

KKI/sub-0050808/mri/lpba40_sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZP/6v/MD5E-s169220--2691a3a68eb89055675656f5363f22d2.nii.gz/MD5E-s169220--2691a3a68eb89055675656f5363f22d2.nii.gz

KKI/sub-0050808/mri/m0wp1sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kp/gm/MD5E-s2613720--b2a80ca792fe018edaf761a209b90320.nii.gz/MD5E-s2613720--b2a80ca792fe018edaf761a209b90320.nii.gz

KKI/sub-0050808/mri/m0wp2sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8v/QW/MD5E-s2321121--8b0a5c97ebeeeceba9f4c42956bcb7d6.nii.gz/MD5E-s2321121--8b0a5c97ebeeeceba9f4c42956bcb7d6.nii.gz

KKI/sub-0050808/mri/m0wp3sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w4/X7/MD5E-s2573991--c160f2ade2cd91b3a815429653aa0a6b.nii.gz/MD5E-s2573991--c160f2ade2cd91b3a815429653aa0a6b.nii.gz

KKI/sub-0050808/mri/mori_sub-0050808_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

KKI/sub-0050808/mri/mori_sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050808/mri/mwp1sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wK/6p/MD5E-s2616946--42c0f925770a1c97e5d68238f722b021.nii.gz/MD5E-s2616946--42c0f925770a1c97e5d68238f722b021.nii.gz

KKI/sub-0050808/mri/mwp2sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X2/5G/MD5E-s2317642--a41eb7ce447b782c329246779fa3332b.nii.gz/MD5E-s2317642--a41eb7ce447b782c329246779fa3332b.nii.gz

KKI/sub-0050808/mri/mwp3sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gf/vQ/MD5E-s2573381--3a3e69c20092a3061f53a16d9e20a670.nii.gz/MD5E-s2573381--3a3e69c20092a3061f53a16d9e20a670.nii.gz

KKI/sub-0050808/mri/neuromorphometrics_sub-0050808_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

KKI/sub-0050808/mri/neuromorphometrics_sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qj/Qf/MD5E-s230350--6ed71c8708955fce0d960776b547eb98.nii.gz/MD5E-s230350--6ed71c8708955fce0d960776b547eb98.nii.gz

KKI/sub-0050808/mri/p0sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f3/6V/MD5E-s709186--983e7fadaa10be66b7b435efc7322c77.nii.gz/MD5E-s709186--983e7fadaa10be66b7b435efc7322c77.nii.gz

KKI/sub-0050808/mri/p1sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PX/Pp/MD5E-s763172--8ec20e7a4c35535b2a6d5675d935171f.nii.gz/MD5E-s763172--8ec20e7a4c35535b2a6d5675d935171f.nii.gz

KKI/sub-0050808/mri/p2sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050808/mri/p3sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j1/KZ/MD5E-s410472--f1b25c3d388a1fe0b957285f11bdd862.nii.gz/MD5E-s410472--f1b25c3d388a1fe0b957285f11bdd862.nii.gz

KKI/sub-0050808/mri/rp1sub-0050808_T1w_affine.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050808/mri/rp2sub-0050808_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j7/jX/MD5E-s318773--c8045351473abda85900d660bff5cbe0.nii.gz/MD5E-s318773--c8045351473abda85900d660bff5cbe0.nii.gz

KKI/sub-0050808/mri/rp3sub-0050808_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zj/Zq/MD5E-s289101--beb500ec64b496c7e9ee560d8571069c.nii.gz/MD5E-s289101--beb500ec64b496c7e9ee560d8571069c.nii.gz

KKI/sub-0050808/mri/t_sub-0050808_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/mW/xg/MD5E-s284--c2bd07e57fd7b5be570b63fbe9b2a500.mat/MD5E-s284--c2bd07e57fd7b5be570b63fbe9b2a500.mat

KKI/sub-0050808/mri/t_sub-0050808_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/p8/j5/MD5E-s283--7693a8de93c95a0e2cc9879c388c7f17.mat/MD5E-s283--7693a8de93c95a0e2cc9879c388c7f17.mat

KKI/sub-0050808/mri/thalamus_sub-0050808_T1w.csv

@@ -0,0 +1 @@
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KKI/sub-0050808/mri/thalamus_sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050808/mri/wj_sub-0050808_T1w.nii.gz

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KKI/sub-0050808/mri/wmisub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050808/mri/wmsub-0050808_T1w.nii.gz

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KKI/sub-0050808/mri/wp0sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050808/mri/wp1sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050808/mri/wp2sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050808/mri/wp3sub-0050808_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050808/mri/y_sub-0050808_T1w.nii.gz

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