[DATALAD RUNCMD] Compute MaxMun_c/sub-0051344

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/MaxMun_c/sub-0051344/anat/sub-0051344_T1w.nii.gz"
 ],
 "outputs": [
  "MaxMun_c/sub-0051344"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MaxMun_c/sub-0051344/label/catROI_sub-0051344_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/qg/mz/MD5E-s58038--c28f733716abe6c3fb1efceecb3af933.mat/MD5E-s58038--c28f733716abe6c3fb1efceecb3af933.mat

MaxMun_c/sub-0051344/label/catROI_sub-0051344_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/3X/z3/MD5E-s188661--427b4af37dd341450924581b3ebf1d1f.xml/MD5E-s188661--427b4af37dd341450924581b3ebf1d1f.xml

MaxMun_c/sub-0051344/label/catROIs_sub-0051344_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/m2/JF/MD5E-s120030--490e19141ed07269f5ee2dfad8fec55d.mat/MD5E-s120030--490e19141ed07269f5ee2dfad8fec55d.mat

MaxMun_c/sub-0051344/label/catROIs_sub-0051344_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/jX/9X/MD5E-s332141--594801449ee281975711f4d1cb7d117b.xml/MD5E-s332141--594801449ee281975711f4d1cb7d117b.xml

MaxMun_c/sub-0051344/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051344_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MaxMun_c/sub-0051344/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X4/JM/MD5E-s172064--7f12da3b2cc3d6211c496f3c27e35e68.nii.gz/MD5E-s172064--7f12da3b2cc3d6211c496f3c27e35e68.nii.gz

MaxMun_c/sub-0051344/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051344_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MaxMun_c/sub-0051344/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WG/XP/MD5E-s192107--d494938014f7e668472dc0c9c71d42aa.nii.gz/MD5E-s192107--d494938014f7e668472dc0c9c71d42aa.nii.gz

MaxMun_c/sub-0051344/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051344_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MaxMun_c/sub-0051344/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f0/1M/MD5E-s260410--0437bdb81d4f0d109c12336db7d2e1c5.nii.gz/MD5E-s260410--0437bdb81d4f0d109c12336db7d2e1c5.nii.gz

MaxMun_c/sub-0051344/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051344_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MaxMun_c/sub-0051344/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XG/84/MD5E-s289715--4846d55c718e50158a5fabd81abb91e8.nii.gz/MD5E-s289715--4846d55c718e50158a5fabd81abb91e8.nii.gz

MaxMun_c/sub-0051344/mri/Tian_Subcortex_S2_7T_sub-0051344_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MaxMun_c/sub-0051344/mri/Tian_Subcortex_S2_7T_sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mv/kp/MD5E-s22720--7562325fcb3203f74c635a0d02375b88.nii.gz/MD5E-s22720--7562325fcb3203f74c635a0d02375b88.nii.gz

MaxMun_c/sub-0051344/mri/aal3_sub-0051344_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

MaxMun_c/sub-0051344/mri/aal3_sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0p/xJ/MD5E-s193719--931ab5bef2d7efe2d01451a59aa75300.nii.gz/MD5E-s193719--931ab5bef2d7efe2d01451a59aa75300.nii.gz

MaxMun_c/sub-0051344/mri/anatomy3_sub-0051344_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

MaxMun_c/sub-0051344/mri/anatomy3_sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mP/zM/MD5E-s137978--543a4c1c40287e31ee38925136ced5aa.nii.gz/MD5E-s137978--543a4c1c40287e31ee38925136ced5aa.nii.gz

MaxMun_c/sub-0051344/mri/anon_misub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V6/x5/MD5E-s8824977--2d53871f06e2c3b5f9a99f8d3165b0d4.nii.gz/MD5E-s8824977--2d53871f06e2c3b5f9a99f8d3165b0d4.nii.gz

MaxMun_c/sub-0051344/mri/anon_msub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4Q/jJ/MD5E-s9180337--8a00704dd86a6423ca092b72a7e04485.nii.gz/MD5E-s9180337--8a00704dd86a6423ca092b72a7e04485.nii.gz

MaxMun_c/sub-0051344/mri/cat_sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5V/M7/MD5E-s106619--18ffc4878abffcf68df60b2264a0b807.nii.gz/MD5E-s106619--18ffc4878abffcf68df60b2264a0b807.nii.gz

MaxMun_c/sub-0051344/mri/cobra_sub-0051344_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MaxMun_c/sub-0051344/mri/cobra_sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2J/qz/MD5E-s47509--2f9550fd266ecb73739853548e0a11bd.nii.gz/MD5E-s47509--2f9550fd266ecb73739853548e0a11bd.nii.gz

MaxMun_c/sub-0051344/mri/hammers_sub-0051344_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MaxMun_c/sub-0051344/mri/hammers_sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6m/Jw/MD5E-s152050--72464f7b8e8c6c8bbe483750367426d1.nii.gz/MD5E-s152050--72464f7b8e8c6c8bbe483750367426d1.nii.gz

MaxMun_c/sub-0051344/mri/ibsr_sub-0051344_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MaxMun_c/sub-0051344/mri/ibsr_sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kP/gp/MD5E-s160770--f8778e1736b105a6e56bd5f5b42a424e.nii.gz/MD5E-s160770--f8778e1736b105a6e56bd5f5b42a424e.nii.gz

MaxMun_c/sub-0051344/mri/it_sub-0051344_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/1J/wV/MD5E-s283--72e5c1c8fc3b71d01fdbf7623ba0e3a0.mat/MD5E-s283--72e5c1c8fc3b71d01fdbf7623ba0e3a0.mat

MaxMun_c/sub-0051344/mri/it_sub-0051344_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/kw/P3/MD5E-s284--e1d95bef0507d6c04e443e0b6cc38b90.mat/MD5E-s284--e1d95bef0507d6c04e443e0b6cc38b90.mat

MaxMun_c/sub-0051344/mri/iy_sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vQ/Wq/MD5E-s47957333--bf37e2701ee18bf5d00d5ca34c4c758e.nii.gz/MD5E-s47957333--bf37e2701ee18bf5d00d5ca34c4c758e.nii.gz

MaxMun_c/sub-0051344/mri/julichbrain_sub-0051344_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

MaxMun_c/sub-0051344/mri/julichbrain_sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/51/q9/MD5E-s206534--7cf5f4a31ded16a45e1c07f54d59b0f1.nii.gz/MD5E-s206534--7cf5f4a31ded16a45e1c07f54d59b0f1.nii.gz

MaxMun_c/sub-0051344/mri/lpba40_sub-0051344_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

MaxMun_c/sub-0051344/mri/lpba40_sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7M/9V/MD5E-s149082--0261f28de1844bf287fe9c24c10c2175.nii.gz/MD5E-s149082--0261f28de1844bf287fe9c24c10c2175.nii.gz

MaxMun_c/sub-0051344/mri/m0wp1sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/67/ZK/MD5E-s2578922--42f8d45605b042debba0fd9da9190e76.nii.gz/MD5E-s2578922--42f8d45605b042debba0fd9da9190e76.nii.gz

MaxMun_c/sub-0051344/mri/m0wp2sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/69/wx/MD5E-s2320081--2c97d2234c5b0f2d7fc46576ae58b0a1.nii.gz/MD5E-s2320081--2c97d2234c5b0f2d7fc46576ae58b0a1.nii.gz

MaxMun_c/sub-0051344/mri/m0wp3sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051344/mri/mori_sub-0051344_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

MaxMun_c/sub-0051344/mri/mori_sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051344/mri/mwp1sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3W/J5/MD5E-s2578506--4aa2c312254a73b91332215e402382de.nii.gz/MD5E-s2578506--4aa2c312254a73b91332215e402382de.nii.gz

MaxMun_c/sub-0051344/mri/mwp2sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8x/6q/MD5E-s2314986--b00ed968da32528e3cb7d2b8e78ea45c.nii.gz/MD5E-s2314986--b00ed968da32528e3cb7d2b8e78ea45c.nii.gz

MaxMun_c/sub-0051344/mri/mwp3sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zp/43/MD5E-s2619840--7fa86f7f9ee34453bfc71ce38a7e410f.nii.gz/MD5E-s2619840--7fa86f7f9ee34453bfc71ce38a7e410f.nii.gz

MaxMun_c/sub-0051344/mri/neuromorphometrics_sub-0051344_T1w.csv

@@ -0,0 +1 @@
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MaxMun_c/sub-0051344/mri/neuromorphometrics_sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051344/mri/p0sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051344/mri/p1sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051344/mri/p2sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051344/mri/p3sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051344/mri/rp1sub-0051344_T1w_affine.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051344/mri/rp2sub-0051344_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8w/kw/MD5E-s307110--2f60043082c8c4d794dab0cc5c3a657c.nii.gz/MD5E-s307110--2f60043082c8c4d794dab0cc5c3a657c.nii.gz

MaxMun_c/sub-0051344/mri/rp3sub-0051344_T1w_affine.nii.gz

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MaxMun_c/sub-0051344/mri/t_sub-0051344_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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MaxMun_c/sub-0051344/mri/t_sub-0051344_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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MaxMun_c/sub-0051344/mri/thalamus_sub-0051344_T1w.csv

@@ -0,0 +1 @@
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MaxMun_c/sub-0051344/mri/thalamus_sub-0051344_T1w.nii.gz

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MaxMun_c/sub-0051344/mri/wj_sub-0051344_T1w.nii.gz

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MaxMun_c/sub-0051344/mri/wmisub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051344/mri/wmsub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051344/mri/wp0sub-0051344_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051344/mri/wp1sub-0051344_T1w.nii.gz

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