[DATALAD RUNCMD] Compute CMU_a/sub-0050665

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/CMU_a/sub-0050665/anat/sub-0050665_T1w.nii.gz"
 ],
 "outputs": [
  "CMU_a/sub-0050665"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

CMU_a/sub-0050665/label/catROI_sub-0050665_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/vW/J3/MD5E-s57762--a06a246e4205e4acdeb607c878bdd472.mat/MD5E-s57762--a06a246e4205e4acdeb607c878bdd472.mat

CMU_a/sub-0050665/label/catROI_sub-0050665_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/xp/1Z/MD5E-s188908--f6b8c5906cd80d45d538a5406fbae4ba.xml/MD5E-s188908--f6b8c5906cd80d45d538a5406fbae4ba.xml

CMU_a/sub-0050665/label/catROIs_sub-0050665_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/GF/vW/MD5E-s120042--8a0d1172a956316ef71fd71cc38f0cf1.mat/MD5E-s120042--8a0d1172a956316ef71fd71cc38f0cf1.mat

CMU_a/sub-0050665/label/catROIs_sub-0050665_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/wK/52/MD5E-s332192--760406fc1767145c0636b505b31a1fb7.xml/MD5E-s332192--760406fc1767145c0636b505b31a1fb7.xml

CMU_a/sub-0050665/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050665_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

CMU_a/sub-0050665/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GQ/9K/MD5E-s159870--123a8987a7c04e3eb176344df7dff9b6.nii.gz/MD5E-s159870--123a8987a7c04e3eb176344df7dff9b6.nii.gz

CMU_a/sub-0050665/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050665_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

CMU_a/sub-0050665/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vG/G9/MD5E-s180789--3d7714cc0be3f691d919c0036077c513.nii.gz/MD5E-s180789--3d7714cc0be3f691d919c0036077c513.nii.gz

CMU_a/sub-0050665/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050665_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

CMU_a/sub-0050665/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xQ/48/MD5E-s236276--0333e84e07c0b3c2d060e64ef48b6da1.nii.gz/MD5E-s236276--0333e84e07c0b3c2d060e64ef48b6da1.nii.gz

CMU_a/sub-0050665/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050665_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

CMU_a/sub-0050665/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pz/P8/MD5E-s263955--93180a27c3ff14427807f8ccb9d6b756.nii.gz/MD5E-s263955--93180a27c3ff14427807f8ccb9d6b756.nii.gz

CMU_a/sub-0050665/mri/Tian_Subcortex_S2_7T_sub-0050665_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

CMU_a/sub-0050665/mri/Tian_Subcortex_S2_7T_sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xm/QF/MD5E-s20409--8fb9cb0804a3c3e0378a0061b43f19d2.nii.gz/MD5E-s20409--8fb9cb0804a3c3e0378a0061b43f19d2.nii.gz

CMU_a/sub-0050665/mri/aal3_sub-0050665_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

CMU_a/sub-0050665/mri/aal3_sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X5/Zp/MD5E-s185243--f635e355fa5d0e77589f36d35dbacb80.nii.gz/MD5E-s185243--f635e355fa5d0e77589f36d35dbacb80.nii.gz

CMU_a/sub-0050665/mri/anatomy3_sub-0050665_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

CMU_a/sub-0050665/mri/anatomy3_sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kx/6x/MD5E-s132178--89c9c81380e02eef273de4e53590a8bc.nii.gz/MD5E-s132178--89c9c81380e02eef273de4e53590a8bc.nii.gz

CMU_a/sub-0050665/mri/anon_misub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vQ/VM/MD5E-s7542010--b0da7435bdf5830fc8680a5024997d1e.nii.gz/MD5E-s7542010--b0da7435bdf5830fc8680a5024997d1e.nii.gz

CMU_a/sub-0050665/mri/anon_msub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pf/f3/MD5E-s8037255--a4d470b4a31ae64e02cbd80485ba5582.nii.gz/MD5E-s8037255--a4d470b4a31ae64e02cbd80485ba5582.nii.gz

CMU_a/sub-0050665/mri/cat_sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X9/pJ/MD5E-s97745--98d30d142892b8901b9cbd9283bf7165.nii.gz/MD5E-s97745--98d30d142892b8901b9cbd9283bf7165.nii.gz

CMU_a/sub-0050665/mri/cobra_sub-0050665_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

CMU_a/sub-0050665/mri/cobra_sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8z/z6/MD5E-s45620--d971c4d5b62e7a2dc8a863d8c695e4af.nii.gz/MD5E-s45620--d971c4d5b62e7a2dc8a863d8c695e4af.nii.gz

CMU_a/sub-0050665/mri/hammers_sub-0050665_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

CMU_a/sub-0050665/mri/hammers_sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/41/fP/MD5E-s143466--abd2dd71e3d886a72578a27d4279eebb.nii.gz/MD5E-s143466--abd2dd71e3d886a72578a27d4279eebb.nii.gz

CMU_a/sub-0050665/mri/ibsr_sub-0050665_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

CMU_a/sub-0050665/mri/ibsr_sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x4/Zp/MD5E-s150105--5033533facaae2e672aa4b396147d415.nii.gz/MD5E-s150105--5033533facaae2e672aa4b396147d415.nii.gz

CMU_a/sub-0050665/mri/it_sub-0050665_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/x9/fJ/MD5E-s283--68f5f8eadb68d484116a505faf0f02cc.mat/MD5E-s283--68f5f8eadb68d484116a505faf0f02cc.mat

CMU_a/sub-0050665/mri/it_sub-0050665_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/pq/QP/MD5E-s284--566ff6f2df7c39666da38461f35c2ed4.mat/MD5E-s284--566ff6f2df7c39666da38461f35c2ed4.mat

CMU_a/sub-0050665/mri/iy_sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zk/Gj/MD5E-s43686611--ee99525bf12f54232cdd459dc28ef0b9.nii.gz/MD5E-s43686611--ee99525bf12f54232cdd459dc28ef0b9.nii.gz

CMU_a/sub-0050665/mri/julichbrain_sub-0050665_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

CMU_a/sub-0050665/mri/julichbrain_sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P7/VV/MD5E-s193043--aae9d89abc03efc1ed6fb1628ad7ab22.nii.gz/MD5E-s193043--aae9d89abc03efc1ed6fb1628ad7ab22.nii.gz

CMU_a/sub-0050665/mri/lpba40_sub-0050665_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

CMU_a/sub-0050665/mri/lpba40_sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050665/mri/m0wp1sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0Z/69/MD5E-s2585671--fc100af8b82d7a3626fbc7c903069366.nii.gz/MD5E-s2585671--fc100af8b82d7a3626fbc7c903069366.nii.gz

CMU_a/sub-0050665/mri/m0wp2sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/px/gx/MD5E-s2334326--8ebd8b7561ed8aacfb7536c998ac30db.nii.gz/MD5E-s2334326--8ebd8b7561ed8aacfb7536c998ac30db.nii.gz

CMU_a/sub-0050665/mri/m0wp3sub-0050665_T1w.nii.gz

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CMU_a/sub-0050665/mri/mori_sub-0050665_T1w.csv

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CMU_a/sub-0050665/mri/mori_sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050665/mri/mwp1sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p4/mV/MD5E-s2589434--eafb0d14629b9a2559b2ae4f4c5b00c9.nii.gz/MD5E-s2589434--eafb0d14629b9a2559b2ae4f4c5b00c9.nii.gz

CMU_a/sub-0050665/mri/mwp2sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/QJ/36/MD5E-s2335585--8b383c3a7e6d9c8aab0642eb1714b9be.nii.gz/MD5E-s2335585--8b383c3a7e6d9c8aab0642eb1714b9be.nii.gz

CMU_a/sub-0050665/mri/mwp3sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VV/0M/MD5E-s2551043--4ddccc375895e225b5db91a03f312cc1.nii.gz/MD5E-s2551043--4ddccc375895e225b5db91a03f312cc1.nii.gz

CMU_a/sub-0050665/mri/neuromorphometrics_sub-0050665_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

CMU_a/sub-0050665/mri/neuromorphometrics_sub-0050665_T1w.nii.gz

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CMU_a/sub-0050665/mri/p0sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7Q/wJ/MD5E-s634077--3c40723998e780ba26a14af5b0199a01.nii.gz/MD5E-s634077--3c40723998e780ba26a14af5b0199a01.nii.gz

CMU_a/sub-0050665/mri/p1sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050665/mri/p2sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050665/mri/p3sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050665/mri/rp1sub-0050665_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/84/MQ/MD5E-s446925--930276ae67bf3dbf4272d22544280953.nii.gz/MD5E-s446925--930276ae67bf3dbf4272d22544280953.nii.gz

CMU_a/sub-0050665/mri/rp2sub-0050665_T1w_affine.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050665/mri/rp3sub-0050665_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gv/4M/MD5E-s292661--9ba6426a21c9f3da037a537e877f53a6.nii.gz/MD5E-s292661--9ba6426a21c9f3da037a537e877f53a6.nii.gz

CMU_a/sub-0050665/mri/t_sub-0050665_T1w_affine_reorient.mat

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CMU_a/sub-0050665/mri/t_sub-0050665_T1w_rigid_reorient.mat

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+../../../.git/annex/objects/1q/PQ/MD5E-s284--e64e26d972cad95dd183cadfe41a6966.mat/MD5E-s284--e64e26d972cad95dd183cadfe41a6966.mat

CMU_a/sub-0050665/mri/thalamus_sub-0050665_T1w.csv

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CMU_a/sub-0050665/mri/thalamus_sub-0050665_T1w.nii.gz

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CMU_a/sub-0050665/mri/wj_sub-0050665_T1w.nii.gz

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CMU_a/sub-0050665/mri/wmisub-0050665_T1w.nii.gz

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CMU_a/sub-0050665/mri/wmsub-0050665_T1w.nii.gz

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CMU_a/sub-0050665/mri/wp0sub-0050665_T1w.nii.gz

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CMU_a/sub-0050665/mri/wp1sub-0050665_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050665/mri/wp2sub-0050665_T1w.nii.gz

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