[DATALAD RUNCMD] Compute Leuven_2/sub-0050753

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Leuven_2/sub-0050753/anat/sub-0050753_T1w.nii.gz"
 ],
 "outputs": [
  "Leuven_2/sub-0050753"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Leuven_2/sub-0050753/label/catROI_sub-0050753_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/V6/j3/MD5E-s61408--6bfb7275541c2dd778b737b6fec5c571.mat/MD5E-s61408--6bfb7275541c2dd778b737b6fec5c571.mat

Leuven_2/sub-0050753/label/catROI_sub-0050753_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/x2/66/MD5E-s188906--b38140d1d5a3cfc8e5bbb96f647f01de.xml/MD5E-s188906--b38140d1d5a3cfc8e5bbb96f647f01de.xml

Leuven_2/sub-0050753/label/catROIs_sub-0050753_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/jg/j8/MD5E-s120008--562d821bc449988f4fc91b3f918aa4a0.mat/MD5E-s120008--562d821bc449988f4fc91b3f918aa4a0.mat

Leuven_2/sub-0050753/label/catROIs_sub-0050753_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q0/vw/MD5E-s332101--db1e265ff5b53fded55d72693dfe4af5.xml/MD5E-s332101--db1e265ff5b53fded55d72693dfe4af5.xml

Leuven_2/sub-0050753/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050753_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Leuven_2/sub-0050753/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vv/8P/MD5E-s181789--94496ce94b3955a0e2db038eb158aa99.nii.gz/MD5E-s181789--94496ce94b3955a0e2db038eb158aa99.nii.gz

Leuven_2/sub-0050753/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050753_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Leuven_2/sub-0050753/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/FG/MD5E-s203646--697f2d25968c685284c11fb311bb122e.nii.gz/MD5E-s203646--697f2d25968c685284c11fb311bb122e.nii.gz

Leuven_2/sub-0050753/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050753_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Leuven_2/sub-0050753/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qq/68/MD5E-s258219--e40e6c744d8eea20ff4756ced23ae05e.nii.gz/MD5E-s258219--e40e6c744d8eea20ff4756ced23ae05e.nii.gz

Leuven_2/sub-0050753/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050753_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Leuven_2/sub-0050753/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1W/9x/MD5E-s288460--5564a2c705954ae70227627c064399af.nii.gz/MD5E-s288460--5564a2c705954ae70227627c064399af.nii.gz

Leuven_2/sub-0050753/mri/Tian_Subcortex_S2_7T_sub-0050753_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Leuven_2/sub-0050753/mri/Tian_Subcortex_S2_7T_sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PK/p2/MD5E-s26248--f911c143b4a74aac1b01c6c4c960ac71.nii.gz/MD5E-s26248--f911c143b4a74aac1b01c6c4c960ac71.nii.gz

Leuven_2/sub-0050753/mri/aal3_sub-0050753_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Leuven_2/sub-0050753/mri/aal3_sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qk/M5/MD5E-s203848--ee6b3f98178d26dcf9b342df09ddf7c6.nii.gz/MD5E-s203848--ee6b3f98178d26dcf9b342df09ddf7c6.nii.gz

Leuven_2/sub-0050753/mri/anatomy3_sub-0050753_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Leuven_2/sub-0050753/mri/anatomy3_sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VM/JG/MD5E-s145126--87bace64e07d01ea62125e37913ea83c.nii.gz/MD5E-s145126--87bace64e07d01ea62125e37913ea83c.nii.gz

Leuven_2/sub-0050753/mri/anon_misub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6p/gM/MD5E-s5866535--9ccdc09fc455206e667876222a8df90c.nii.gz/MD5E-s5866535--9ccdc09fc455206e667876222a8df90c.nii.gz

Leuven_2/sub-0050753/mri/anon_msub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XQ/9V/MD5E-s12191359--6c79c08c5a1c5f878932d8a912407328.nii.gz/MD5E-s12191359--6c79c08c5a1c5f878932d8a912407328.nii.gz

Leuven_2/sub-0050753/mri/cat_sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wJ/7m/MD5E-s108478--30e7755ce410eff3796588e1b841d311.nii.gz/MD5E-s108478--30e7755ce410eff3796588e1b841d311.nii.gz

Leuven_2/sub-0050753/mri/cobra_sub-0050753_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Leuven_2/sub-0050753/mri/cobra_sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7k/P4/MD5E-s49612--5c256dc101a39ace3a6163798764a4ff.nii.gz/MD5E-s49612--5c256dc101a39ace3a6163798764a4ff.nii.gz

Leuven_2/sub-0050753/mri/hammers_sub-0050753_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Leuven_2/sub-0050753/mri/hammers_sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/86/5G/MD5E-s159237--f0f48215e5c4d50e9b9d1daebf39ccfe.nii.gz/MD5E-s159237--f0f48215e5c4d50e9b9d1daebf39ccfe.nii.gz

Leuven_2/sub-0050753/mri/ibsr_sub-0050753_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Leuven_2/sub-0050753/mri/ibsr_sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3q/Wp/MD5E-s163702--b20d9f2ece182a228ccbbe81a6e4f59d.nii.gz/MD5E-s163702--b20d9f2ece182a228ccbbe81a6e4f59d.nii.gz

Leuven_2/sub-0050753/mri/it_sub-0050753_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/6P/q4/MD5E-s283--a88a593f41b427ffacefbf30e9232445.mat/MD5E-s283--a88a593f41b427ffacefbf30e9232445.mat

Leuven_2/sub-0050753/mri/it_sub-0050753_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/w0/V8/MD5E-s283--8ca10581a3b4f896626fedf73160096c.mat/MD5E-s283--8ca10581a3b4f896626fedf73160096c.mat

Leuven_2/sub-0050753/mri/iy_sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wX/56/MD5E-s43243119--3601c60c27332274acc02cbb6d7b1974.nii.gz/MD5E-s43243119--3601c60c27332274acc02cbb6d7b1974.nii.gz

Leuven_2/sub-0050753/mri/julichbrain_sub-0050753_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Leuven_2/sub-0050753/mri/julichbrain_sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jv/ZG/MD5E-s216117--7916a1430cdc1785b6efdb5ecd669be9.nii.gz/MD5E-s216117--7916a1430cdc1785b6efdb5ecd669be9.nii.gz

Leuven_2/sub-0050753/mri/lpba40_sub-0050753_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Leuven_2/sub-0050753/mri/lpba40_sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vQ/v3/MD5E-s156357--5755f9e546891994075121827b53e117.nii.gz/MD5E-s156357--5755f9e546891994075121827b53e117.nii.gz

Leuven_2/sub-0050753/mri/m0wp1sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q2/mw/MD5E-s2620662--039c05d57b3d7439556dea882de98291.nii.gz/MD5E-s2620662--039c05d57b3d7439556dea882de98291.nii.gz

Leuven_2/sub-0050753/mri/m0wp2sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/22/xG/MD5E-s2301544--7dc01cb2105c080f98698714fd571c47.nii.gz/MD5E-s2301544--7dc01cb2105c080f98698714fd571c47.nii.gz

Leuven_2/sub-0050753/mri/m0wp3sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fP/7K/MD5E-s2599896--6f10d6d02e07862702babb520334a966.nii.gz/MD5E-s2599896--6f10d6d02e07862702babb520334a966.nii.gz

Leuven_2/sub-0050753/mri/mori_sub-0050753_T1w.csv

@@ -0,0 +1 @@
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Leuven_2/sub-0050753/mri/mori_sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W5/9F/MD5E-s186304--836c18265e466daad29b64ab074b79a8.nii.gz/MD5E-s186304--836c18265e466daad29b64ab074b79a8.nii.gz

Leuven_2/sub-0050753/mri/mwp1sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zf/xZ/MD5E-s2623596--c1326e540c1ef9c4f772bd7ecf3a953e.nii.gz/MD5E-s2623596--c1326e540c1ef9c4f772bd7ecf3a953e.nii.gz

Leuven_2/sub-0050753/mri/mwp2sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JZ/2q/MD5E-s2298730--7193a4ebcb09b8f5c45bbcdf90bd19a8.nii.gz/MD5E-s2298730--7193a4ebcb09b8f5c45bbcdf90bd19a8.nii.gz

Leuven_2/sub-0050753/mri/mwp3sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z8/qq/MD5E-s2599372--c8258c0ee6549845fc2daa5aaa247bf1.nii.gz/MD5E-s2599372--c8258c0ee6549845fc2daa5aaa247bf1.nii.gz

Leuven_2/sub-0050753/mri/neuromorphometrics_sub-0050753_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

Leuven_2/sub-0050753/mri/neuromorphometrics_sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pp/qx/MD5E-s211611--588e260cad4f80345397272dfcb5fb6a.nii.gz/MD5E-s211611--588e260cad4f80345397272dfcb5fb6a.nii.gz

Leuven_2/sub-0050753/mri/p0sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X2/PW/MD5E-s659916--d2f883d6fb7860baf93d43dc0729f567.nii.gz/MD5E-s659916--d2f883d6fb7860baf93d43dc0729f567.nii.gz

Leuven_2/sub-0050753/mri/p1sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2G/pX/MD5E-s708184--9e4f3dfa67eb91dd8a4932adbfff1c3b.nii.gz/MD5E-s708184--9e4f3dfa67eb91dd8a4932adbfff1c3b.nii.gz

Leuven_2/sub-0050753/mri/p2sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050753/mri/p3sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050753/mri/rp1sub-0050753_T1w_affine.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050753/mri/rp2sub-0050753_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mp/mv/MD5E-s313453--b424b9d83d571b853b81b4e49b8c1bb6.nii.gz/MD5E-s313453--b424b9d83d571b853b81b4e49b8c1bb6.nii.gz

Leuven_2/sub-0050753/mri/rp3sub-0050753_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zp/7M/MD5E-s319054--23189a71657036f4b663e8502511b5d4.nii.gz/MD5E-s319054--23189a71657036f4b663e8502511b5d4.nii.gz

Leuven_2/sub-0050753/mri/t_sub-0050753_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/wz/vJ/MD5E-s283--ba77228ae59fa0353afd683db457c82a.mat/MD5E-s283--ba77228ae59fa0353afd683db457c82a.mat

Leuven_2/sub-0050753/mri/t_sub-0050753_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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Leuven_2/sub-0050753/mri/thalamus_sub-0050753_T1w.csv

@@ -0,0 +1 @@
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Leuven_2/sub-0050753/mri/thalamus_sub-0050753_T1w.nii.gz

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Leuven_2/sub-0050753/mri/wj_sub-0050753_T1w.nii.gz

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Leuven_2/sub-0050753/mri/wmisub-0050753_T1w.nii.gz

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Leuven_2/sub-0050753/mri/wmsub-0050753_T1w.nii.gz

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Leuven_2/sub-0050753/mri/wp0sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050753/mri/wp1sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050753/mri/wp2sub-0050753_T1w.nii.gz

@@ -0,0 +1 @@
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