[DATALAD RUNCMD] Compute UM_1/sub-0050286

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050286/anat/sub-0050286_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050286"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050286/label/catROI_sub-0050286_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/2z/gf/MD5E-s61359--219de839b2070d32209efa4a293d640a.mat/MD5E-s61359--219de839b2070d32209efa4a293d640a.mat

UM_1/sub-0050286/label/catROI_sub-0050286_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fk/zm/MD5E-s189147--60ff58db39d1de1d81ccbc7fddc5e503.xml/MD5E-s189147--60ff58db39d1de1d81ccbc7fddc5e503.xml

UM_1/sub-0050286/label/catROIs_sub-0050286_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/3V/xJ/MD5E-s120149--fd13ed0d61515f63bbf6f882b4bbe2a6.mat/MD5E-s120149--fd13ed0d61515f63bbf6f882b4bbe2a6.mat

UM_1/sub-0050286/label/catROIs_sub-0050286_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/36/26/MD5E-s332081--1ffc544ad93b28b3e92b8a3ad9e6f9f5.xml/MD5E-s332081--1ffc544ad93b28b3e92b8a3ad9e6f9f5.xml

UM_1/sub-0050286/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050286_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050286/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050286_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K4/Q6/MD5E-s147691--ab95b591cf40c1f78e8cf266d6f7406b.nii.gz/MD5E-s147691--ab95b591cf40c1f78e8cf266d6f7406b.nii.gz

UM_1/sub-0050286/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050286_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_1/sub-0050286/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050286_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vw/8F/MD5E-s165147--cbfd1442d3e7f6bf1d7375c8d1b7b483.nii.gz/MD5E-s165147--cbfd1442d3e7f6bf1d7375c8d1b7b483.nii.gz

UM_1/sub-0050286/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050286_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050286/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050286_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gf/fp/MD5E-s208697--1d35e88230b6ab69e12d615db4f6112d.nii.gz/MD5E-s208697--1d35e88230b6ab69e12d615db4f6112d.nii.gz

UM_1/sub-0050286/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050286_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050286/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050286_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gp/Q2/MD5E-s231956--72eb3f662b7cdb42a59e3d2dab7086aa.nii.gz/MD5E-s231956--72eb3f662b7cdb42a59e3d2dab7086aa.nii.gz

UM_1/sub-0050286/mri/Tian_Subcortex_S2_7T_sub-0050286_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050286/mri/Tian_Subcortex_S2_7T_sub-0050286_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w0/J3/MD5E-s20278--8265bd5c2be397fedc444ceeb9b2e3b5.nii.gz/MD5E-s20278--8265bd5c2be397fedc444ceeb9b2e3b5.nii.gz

UM_1/sub-0050286/mri/aal3_sub-0050286_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050286/mri/aal3_sub-0050286_T1w.nii.gz

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UM_1/sub-0050286/mri/anatomy3_sub-0050286_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

UM_1/sub-0050286/mri/anatomy3_sub-0050286_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0x/z6/MD5E-s118744--663dee523745d4a95eb50d7948a0d9d4.nii.gz/MD5E-s118744--663dee523745d4a95eb50d7948a0d9d4.nii.gz

UM_1/sub-0050286/mri/anon_misub-0050286_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F0/K8/MD5E-s3630465--6ed4695b671975570251b73a12cf18e9.nii.gz/MD5E-s3630465--6ed4695b671975570251b73a12cf18e9.nii.gz

UM_1/sub-0050286/mri/anon_msub-0050286_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GJ/4W/MD5E-s7568416--201a29170f385d0fb42a1dc93c80dca0.nii.gz/MD5E-s7568416--201a29170f385d0fb42a1dc93c80dca0.nii.gz

UM_1/sub-0050286/mri/cat_sub-0050286_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pK/jJ/MD5E-s93764--b93daf8b82c74a2ac5472943659ae3ea.nii.gz/MD5E-s93764--b93daf8b82c74a2ac5472943659ae3ea.nii.gz

UM_1/sub-0050286/mri/cobra_sub-0050286_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050286/mri/cobra_sub-0050286_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050286/mri/hammers_sub-0050286_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050286/mri/hammers_sub-0050286_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Km/W8/MD5E-s129656--939a9561d6135f5b91c76c8a53e875d0.nii.gz/MD5E-s129656--939a9561d6135f5b91c76c8a53e875d0.nii.gz

UM_1/sub-0050286/mri/ibsr_sub-0050286_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

UM_1/sub-0050286/mri/ibsr_sub-0050286_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050286/mri/it_sub-0050286_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/JX/q1/MD5E-s284--7649abcf165483219cc4bf8465a6e4f1.mat/MD5E-s284--7649abcf165483219cc4bf8465a6e4f1.mat

UM_1/sub-0050286/mri/it_sub-0050286_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/0X/k2/MD5E-s283--aaed27e9a94562b9f83fe19af9fc4885.mat/MD5E-s283--aaed27e9a94562b9f83fe19af9fc4885.mat

UM_1/sub-0050286/mri/iy_sub-0050286_T1w.nii.gz

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UM_1/sub-0050286/mri/julichbrain_sub-0050286_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UM_1/sub-0050286/mri/julichbrain_sub-0050286_T1w.nii.gz

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UM_1/sub-0050286/mri/lpba40_sub-0050286_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

UM_1/sub-0050286/mri/lpba40_sub-0050286_T1w.nii.gz

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UM_1/sub-0050286/mri/m0wp1sub-0050286_T1w.nii.gz

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UM_1/sub-0050286/mri/m0wp2sub-0050286_T1w.nii.gz

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UM_1/sub-0050286/mri/m0wp3sub-0050286_T1w.nii.gz

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UM_1/sub-0050286/mri/mori_sub-0050286_T1w.csv

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UM_1/sub-0050286/mri/mori_sub-0050286_T1w.nii.gz

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UM_1/sub-0050286/mri/mwp1sub-0050286_T1w.nii.gz

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UM_1/sub-0050286/mri/mwp2sub-0050286_T1w.nii.gz

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UM_1/sub-0050286/mri/mwp3sub-0050286_T1w.nii.gz

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UM_1/sub-0050286/mri/neuromorphometrics_sub-0050286_T1w.csv

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UM_1/sub-0050286/mri/neuromorphometrics_sub-0050286_T1w.nii.gz

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UM_1/sub-0050286/mri/p0sub-0050286_T1w.nii.gz

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UM_1/sub-0050286/mri/p1sub-0050286_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050286/mri/p2sub-0050286_T1w.nii.gz

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UM_1/sub-0050286/mri/p3sub-0050286_T1w.nii.gz

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UM_1/sub-0050286/mri/rp1sub-0050286_T1w_affine.nii.gz

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UM_1/sub-0050286/mri/rp2sub-0050286_T1w_affine.nii.gz

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UM_1/sub-0050286/mri/rp3sub-0050286_T1w_affine.nii.gz

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UM_1/sub-0050286/mri/t_sub-0050286_T1w_affine_reorient.mat

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UM_1/sub-0050286/mri/t_sub-0050286_T1w_rigid_reorient.mat

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UM_1/sub-0050286/mri/thalamus_sub-0050286_T1w.csv

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UM_1/sub-0050286/mri/thalamus_sub-0050286_T1w.nii.gz

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UM_1/sub-0050286/mri/wj_sub-0050286_T1w.nii.gz

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UM_1/sub-0050286/mri/wmisub-0050286_T1w.nii.gz

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UM_1/sub-0050286/mri/wmsub-0050286_T1w.nii.gz

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UM_1/sub-0050286/mri/wp0sub-0050286_T1w.nii.gz

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UM_1/sub-0050286/mri/wp1sub-0050286_T1w.nii.gz

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UM_1/sub-0050286/mri/wp2sub-0050286_T1w.nii.gz

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