[DATALAD RUNCMD] Compute NYU/sub-0050999

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/NYU/sub-0050999/anat/sub-0050999_T1w.nii.gz"
 ],
 "outputs": [
  "NYU/sub-0050999"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU/sub-0050999/label/catROI_sub-0050999_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/jM/W4/MD5E-s57869--b77d34a7cbd818dfba07b0516140bdcc.mat/MD5E-s57869--b77d34a7cbd818dfba07b0516140bdcc.mat

NYU/sub-0050999/label/catROI_sub-0050999_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/PX/fM/MD5E-s188820--154b77770436c8dc9e7e083061bcfdc5.xml/MD5E-s188820--154b77770436c8dc9e7e083061bcfdc5.xml

NYU/sub-0050999/label/catROIs_sub-0050999_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/f3/7f/MD5E-s120361--4b899a712241de51e0c2d1da5a7632db.mat/MD5E-s120361--4b899a712241de51e0c2d1da5a7632db.mat

NYU/sub-0050999/label/catROIs_sub-0050999_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/qx/k7/MD5E-s332172--a702d57b57363a07ce2d4550dca608f0.xml/MD5E-s332172--a702d57b57363a07ce2d4550dca608f0.xml

NYU/sub-0050999/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050999_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU/sub-0050999/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050999_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kf/2J/MD5E-s151827--a084919705c5caf446d4223fab56e29e.nii.gz/MD5E-s151827--a084919705c5caf446d4223fab56e29e.nii.gz

NYU/sub-0050999/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050999_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU/sub-0050999/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050999_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FZ/gw/MD5E-s168493--8976fdfaf0fbd258ba526a956f872ea4.nii.gz/MD5E-s168493--8976fdfaf0fbd258ba526a956f872ea4.nii.gz

NYU/sub-0050999/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050999_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU/sub-0050999/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050999_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mv/79/MD5E-s228700--6994dbf0c5f06a6e1df586f9811f41c0.nii.gz/MD5E-s228700--6994dbf0c5f06a6e1df586f9811f41c0.nii.gz

NYU/sub-0050999/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050999_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU/sub-0050999/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050999_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j8/fp/MD5E-s252708--2a74d675b517feb021159d418cbd8f0e.nii.gz/MD5E-s252708--2a74d675b517feb021159d418cbd8f0e.nii.gz

NYU/sub-0050999/mri/Tian_Subcortex_S2_7T_sub-0050999_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU/sub-0050999/mri/Tian_Subcortex_S2_7T_sub-0050999_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J0/9X/MD5E-s20555--29ff7f0f5387dda78b2c7660ecb5e757.nii.gz/MD5E-s20555--29ff7f0f5387dda78b2c7660ecb5e757.nii.gz

NYU/sub-0050999/mri/aal3_sub-0050999_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

NYU/sub-0050999/mri/aal3_sub-0050999_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JQ/Fm/MD5E-s173136--4ed2136b0b22539dec078175a13b9c52.nii.gz/MD5E-s173136--4ed2136b0b22539dec078175a13b9c52.nii.gz

NYU/sub-0050999/mri/anatomy3_sub-0050999_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

NYU/sub-0050999/mri/anatomy3_sub-0050999_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p9/k6/MD5E-s120674--9b6c306c965700d9dcbca5ef1160bf97.nii.gz/MD5E-s120674--9b6c306c965700d9dcbca5ef1160bf97.nii.gz

NYU/sub-0050999/mri/anon_misub-0050999_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fj/8m/MD5E-s4441749--f5075e2c4152f23b2355d8fa6bd2d2ca.nii.gz/MD5E-s4441749--f5075e2c4152f23b2355d8fa6bd2d2ca.nii.gz

NYU/sub-0050999/mri/anon_msub-0050999_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8Q/0G/MD5E-s9744130--dc029bc7d053ade75385cff2c589fa63.nii.gz/MD5E-s9744130--dc029bc7d053ade75385cff2c589fa63.nii.gz

NYU/sub-0050999/mri/cat_sub-0050999_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/46/kp/MD5E-s93417--f828277dc2e6140f14cf33608afbce38.nii.gz/MD5E-s93417--f828277dc2e6140f14cf33608afbce38.nii.gz

NYU/sub-0050999/mri/cobra_sub-0050999_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU/sub-0050999/mri/cobra_sub-0050999_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2f/Vm/MD5E-s41536--ac481c7ae11f02c3e868f4a12b932692.nii.gz/MD5E-s41536--ac481c7ae11f02c3e868f4a12b932692.nii.gz

NYU/sub-0050999/mri/hammers_sub-0050999_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU/sub-0050999/mri/hammers_sub-0050999_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4p/Z9/MD5E-s131154--0bca15df5a6b713eecb98287a3405745.nii.gz/MD5E-s131154--0bca15df5a6b713eecb98287a3405745.nii.gz

NYU/sub-0050999/mri/ibsr_sub-0050999_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

NYU/sub-0050999/mri/ibsr_sub-0050999_T1w.nii.gz

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+../../../.git/annex/objects/m0/VX/MD5E-s139550--eaca415276072eb789a0fd3907def2ee.nii.gz/MD5E-s139550--eaca415276072eb789a0fd3907def2ee.nii.gz

NYU/sub-0050999/mri/it_sub-0050999_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z0/xj/MD5E-s283--38d435250924abbb5665103b1dccfbce.mat/MD5E-s283--38d435250924abbb5665103b1dccfbce.mat

NYU/sub-0050999/mri/it_sub-0050999_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/KJ/pG/MD5E-s282--78c0dac94a790042d97da34ff1074fa0.mat/MD5E-s282--78c0dac94a790042d97da34ff1074fa0.mat

NYU/sub-0050999/mri/iy_sub-0050999_T1w.nii.gz

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+../../../.git/annex/objects/9K/1K/MD5E-s36327116--38d7b60658f32154c7f968351cab9f8f.nii.gz/MD5E-s36327116--38d7b60658f32154c7f968351cab9f8f.nii.gz

NYU/sub-0050999/mri/julichbrain_sub-0050999_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU/sub-0050999/mri/julichbrain_sub-0050999_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xw/Fj/MD5E-s178117--5b50bda79e5f5d817d85f06771dac24c.nii.gz/MD5E-s178117--5b50bda79e5f5d817d85f06771dac24c.nii.gz

NYU/sub-0050999/mri/lpba40_sub-0050999_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

NYU/sub-0050999/mri/lpba40_sub-0050999_T1w.nii.gz

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NYU/sub-0050999/mri/m0wp1sub-0050999_T1w.nii.gz

@@ -0,0 +1 @@
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NYU/sub-0050999/mri/m0wp2sub-0050999_T1w.nii.gz

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NYU/sub-0050999/mri/m0wp3sub-0050999_T1w.nii.gz

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NYU/sub-0050999/mri/mori_sub-0050999_T1w.csv

@@ -0,0 +1 @@
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NYU/sub-0050999/mri/mori_sub-0050999_T1w.nii.gz

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NYU/sub-0050999/mri/mwp1sub-0050999_T1w.nii.gz

@@ -0,0 +1 @@
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NYU/sub-0050999/mri/mwp2sub-0050999_T1w.nii.gz

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NYU/sub-0050999/mri/mwp3sub-0050999_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G0/g0/MD5E-s2244256--1359feb55a51adc1ac6ad2cb18af5648.nii.gz/MD5E-s2244256--1359feb55a51adc1ac6ad2cb18af5648.nii.gz

NYU/sub-0050999/mri/neuromorphometrics_sub-0050999_T1w.csv

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NYU/sub-0050999/mri/neuromorphometrics_sub-0050999_T1w.nii.gz

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NYU/sub-0050999/mri/p0sub-0050999_T1w.nii.gz

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NYU/sub-0050999/mri/p1sub-0050999_T1w.nii.gz

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NYU/sub-0050999/mri/p2sub-0050999_T1w.nii.gz

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NYU/sub-0050999/mri/p3sub-0050999_T1w.nii.gz

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NYU/sub-0050999/mri/rp1sub-0050999_T1w_affine.nii.gz

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NYU/sub-0050999/mri/rp2sub-0050999_T1w_affine.nii.gz

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NYU/sub-0050999/mri/rp3sub-0050999_T1w_affine.nii.gz

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NYU/sub-0050999/mri/t_sub-0050999_T1w_affine_reorient.mat

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NYU/sub-0050999/mri/t_sub-0050999_T1w_rigid_reorient.mat

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NYU/sub-0050999/mri/thalamus_sub-0050999_T1w.csv

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NYU/sub-0050999/mri/thalamus_sub-0050999_T1w.nii.gz

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NYU/sub-0050999/mri/wj_sub-0050999_T1w.nii.gz

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NYU/sub-0050999/mri/wmisub-0050999_T1w.nii.gz

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NYU/sub-0050999/mri/wmsub-0050999_T1w.nii.gz

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NYU/sub-0050999/mri/wp0sub-0050999_T1w.nii.gz

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NYU/sub-0050999/mri/wp1sub-0050999_T1w.nii.gz

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NYU/sub-0050999/mri/wp2sub-0050999_T1w.nii.gz

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NYU/sub-0050999/mri/wp3sub-0050999_T1w.nii.gz

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