[DATALAD RUNCMD] Compute UM_1/sub-0050311

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050311/anat/sub-0050311_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050311"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050311/label/catROI_sub-0050311_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mw/6K/MD5E-s61341--6a355f4ea044328bf26d099234b18c48.mat/MD5E-s61341--6a355f4ea044328bf26d099234b18c48.mat

UM_1/sub-0050311/label/catROI_sub-0050311_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/VV/9v/MD5E-s188783--88af198444584fe3e863529e8db8e3c8.xml/MD5E-s188783--88af198444584fe3e863529e8db8e3c8.xml

UM_1/sub-0050311/label/catROIs_sub-0050311_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/v4/j2/MD5E-s120427--cf62a499b5f3d7e6664fe9c4c7d9311b.mat/MD5E-s120427--cf62a499b5f3d7e6664fe9c4c7d9311b.mat

UM_1/sub-0050311/label/catROIs_sub-0050311_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/1m/p0/MD5E-s332148--92723327e6d204236d4b489e50a88971.xml/MD5E-s332148--92723327e6d204236d4b489e50a88971.xml

UM_1/sub-0050311/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050311_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050311/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050311_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gK/WZ/MD5E-s161479--81bab319433667c6a33390a09cf301e7.nii.gz/MD5E-s161479--81bab319433667c6a33390a09cf301e7.nii.gz

UM_1/sub-0050311/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050311_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_1/sub-0050311/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050311_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6G/pX/MD5E-s182344--0d4351dfda6b5ec2ae459a5a2cb51cc3.nii.gz/MD5E-s182344--0d4351dfda6b5ec2ae459a5a2cb51cc3.nii.gz

UM_1/sub-0050311/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050311_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050311/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050311_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pz/qj/MD5E-s230462--64f48a83a9536956a0e51c11cfeba330.nii.gz/MD5E-s230462--64f48a83a9536956a0e51c11cfeba330.nii.gz

UM_1/sub-0050311/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050311_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050311/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050311_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/JZ/MD5E-s256072--1997ad6b6167fc00cfa20c5ad64abde6.nii.gz/MD5E-s256072--1997ad6b6167fc00cfa20c5ad64abde6.nii.gz

UM_1/sub-0050311/mri/Tian_Subcortex_S2_7T_sub-0050311_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050311/mri/Tian_Subcortex_S2_7T_sub-0050311_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/64/6K/MD5E-s20652--1c47b52eed9ba73a9269030cb6123dfd.nii.gz/MD5E-s20652--1c47b52eed9ba73a9269030cb6123dfd.nii.gz

UM_1/sub-0050311/mri/aal3_sub-0050311_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050311/mri/aal3_sub-0050311_T1w.nii.gz

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UM_1/sub-0050311/mri/anatomy3_sub-0050311_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050311/mri/anatomy3_sub-0050311_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KK/0x/MD5E-s131240--38ea1766a75b25eade415068ba7f2741.nii.gz/MD5E-s131240--38ea1766a75b25eade415068ba7f2741.nii.gz

UM_1/sub-0050311/mri/anon_misub-0050311_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050311/mri/anon_msub-0050311_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mX/89/MD5E-s3785254--e8f93f8c0918bdf17d82dddb9a946189.nii.gz/MD5E-s3785254--e8f93f8c0918bdf17d82dddb9a946189.nii.gz

UM_1/sub-0050311/mri/cat_sub-0050311_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zx/3W/MD5E-s95645--973ef4ae265ad979f520c98ec1ce7e98.nii.gz/MD5E-s95645--973ef4ae265ad979f520c98ec1ce7e98.nii.gz

UM_1/sub-0050311/mri/cobra_sub-0050311_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050311/mri/cobra_sub-0050311_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050311/mri/hammers_sub-0050311_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050311/mri/hammers_sub-0050311_T1w.nii.gz

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UM_1/sub-0050311/mri/ibsr_sub-0050311_T1w.csv

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UM_1/sub-0050311/mri/ibsr_sub-0050311_T1w.nii.gz

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UM_1/sub-0050311/mri/it_sub-0050311_T1w_affine_reorient.mat

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+../../../.git/annex/objects/75/2p/MD5E-s284--1c8ce3ad8ad7a2bc28b0d6f1106aea94.mat/MD5E-s284--1c8ce3ad8ad7a2bc28b0d6f1106aea94.mat

UM_1/sub-0050311/mri/it_sub-0050311_T1w_rigid_reorient.mat

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UM_1/sub-0050311/mri/iy_sub-0050311_T1w.nii.gz

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UM_1/sub-0050311/mri/julichbrain_sub-0050311_T1w.csv

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UM_1/sub-0050311/mri/julichbrain_sub-0050311_T1w.nii.gz

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UM_1/sub-0050311/mri/lpba40_sub-0050311_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050311/mri/lpba40_sub-0050311_T1w.nii.gz

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UM_1/sub-0050311/mri/m0wp1sub-0050311_T1w.nii.gz

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UM_1/sub-0050311/mri/m0wp2sub-0050311_T1w.nii.gz

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UM_1/sub-0050311/mri/m0wp3sub-0050311_T1w.nii.gz

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UM_1/sub-0050311/mri/mori_sub-0050311_T1w.csv

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UM_1/sub-0050311/mri/mori_sub-0050311_T1w.nii.gz

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UM_1/sub-0050311/mri/mwp1sub-0050311_T1w.nii.gz

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UM_1/sub-0050311/mri/mwp2sub-0050311_T1w.nii.gz

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UM_1/sub-0050311/mri/mwp3sub-0050311_T1w.nii.gz

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UM_1/sub-0050311/mri/neuromorphometrics_sub-0050311_T1w.csv

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UM_1/sub-0050311/mri/neuromorphometrics_sub-0050311_T1w.nii.gz

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UM_1/sub-0050311/mri/p0sub-0050311_T1w.nii.gz

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UM_1/sub-0050311/mri/p1sub-0050311_T1w.nii.gz

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UM_1/sub-0050311/mri/p2sub-0050311_T1w.nii.gz

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UM_1/sub-0050311/mri/p3sub-0050311_T1w.nii.gz

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UM_1/sub-0050311/mri/rp1sub-0050311_T1w_affine.nii.gz

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UM_1/sub-0050311/mri/rp2sub-0050311_T1w_affine.nii.gz

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UM_1/sub-0050311/mri/rp3sub-0050311_T1w_affine.nii.gz

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UM_1/sub-0050311/mri/t_sub-0050311_T1w_affine_reorient.mat

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UM_1/sub-0050311/mri/t_sub-0050311_T1w_rigid_reorient.mat

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UM_1/sub-0050311/mri/thalamus_sub-0050311_T1w.csv

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UM_1/sub-0050311/mri/thalamus_sub-0050311_T1w.nii.gz

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UM_1/sub-0050311/mri/wj_sub-0050311_T1w.nii.gz

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UM_1/sub-0050311/mri/wmisub-0050311_T1w.nii.gz

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UM_1/sub-0050311/mri/wmsub-0050311_T1w.nii.gz

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UM_1/sub-0050311/mri/wp0sub-0050311_T1w.nii.gz

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UM_1/sub-0050311/mri/wp1sub-0050311_T1w.nii.gz

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