[DATALAD RUNCMD] Compute USM/sub-0050441

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050441/anat/sub-0050441_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050441"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050441/label/catROI_sub-0050441_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/8z/fv/MD5E-s61451--2751a44a83ff367193674806f2c7f888.mat/MD5E-s61451--2751a44a83ff367193674806f2c7f888.mat

USM/sub-0050441/label/catROI_sub-0050441_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/9m/gZ/MD5E-s188982--3bffec34edca99eb8663d6f158f162fb.xml/MD5E-s188982--3bffec34edca99eb8663d6f158f162fb.xml

USM/sub-0050441/label/catROIs_sub-0050441_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/m7/0v/MD5E-s120112--16a336e87ab722b198629420af9b9cb6.mat/MD5E-s120112--16a336e87ab722b198629420af9b9cb6.mat

USM/sub-0050441/label/catROIs_sub-0050441_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/gQ/z9/MD5E-s332149--aa4b7de760b580911a744b86fd7f4276.xml/MD5E-s332149--aa4b7de760b580911a744b86fd7f4276.xml

USM/sub-0050441/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050441_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050441/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1M/kq/MD5E-s413604--f5dc44f07033fb780c8e419e8fa3461c.nii.gz/MD5E-s413604--f5dc44f07033fb780c8e419e8fa3461c.nii.gz

USM/sub-0050441/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050441_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050441/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W1/3p/MD5E-s460211--0587e4820c6941358a0c79caca2dc942.nii.gz/MD5E-s460211--0587e4820c6941358a0c79caca2dc942.nii.gz

USM/sub-0050441/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050441_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050441/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qm/6Q/MD5E-s663992--8c8c67fa34679f651640a3876d1bc014.nii.gz/MD5E-s663992--8c8c67fa34679f651640a3876d1bc014.nii.gz

USM/sub-0050441/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050441_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050441/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q9/K3/MD5E-s728654--fc3a11c86730e2e1b4b8c1748a79a78f.nii.gz/MD5E-s728654--fc3a11c86730e2e1b4b8c1748a79a78f.nii.gz

USM/sub-0050441/mri/Tian_Subcortex_S2_7T_sub-0050441_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050441/mri/Tian_Subcortex_S2_7T_sub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kF/Z5/MD5E-s70717--40b889937c1d317113239c91411b2a73.nii.gz/MD5E-s70717--40b889937c1d317113239c91411b2a73.nii.gz

USM/sub-0050441/mri/aal3_sub-0050441_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050441/mri/aal3_sub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f5/Pf/MD5E-s468561--8acda90a878ac0e8b442862c6a58d95b.nii.gz/MD5E-s468561--8acda90a878ac0e8b442862c6a58d95b.nii.gz

USM/sub-0050441/mri/anatomy3_sub-0050441_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050441/mri/anatomy3_sub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k9/Mj/MD5E-s342253--24f9e0907152479954d11588bf96934b.nii.gz/MD5E-s342253--24f9e0907152479954d11588bf96934b.nii.gz

USM/sub-0050441/mri/anon_misub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jm/Qw/MD5E-s20232976--d080eebcc125e4c7f4071a1698193ecc.nii.gz/MD5E-s20232976--d080eebcc125e4c7f4071a1698193ecc.nii.gz

USM/sub-0050441/mri/anon_msub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X0/j1/MD5E-s35426153--f16e291a570e904620bdfea720d3cc90.nii.gz/MD5E-s35426153--f16e291a570e904620bdfea720d3cc90.nii.gz

USM/sub-0050441/mri/cat_sub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G6/1m/MD5E-s260538--ceb7327e4608290df0b18216a74e865e.nii.gz/MD5E-s260538--ceb7327e4608290df0b18216a74e865e.nii.gz

USM/sub-0050441/mri/cobra_sub-0050441_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050441/mri/cobra_sub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/22/fJ/MD5E-s133157--aec3d33b3d72c238698ef6f0e5a60944.nii.gz/MD5E-s133157--aec3d33b3d72c238698ef6f0e5a60944.nii.gz

USM/sub-0050441/mri/hammers_sub-0050441_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050441/mri/hammers_sub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wf/w0/MD5E-s370344--463a7fb1f41af52bcf21706d826d564b.nii.gz/MD5E-s370344--463a7fb1f41af52bcf21706d826d564b.nii.gz

USM/sub-0050441/mri/ibsr_sub-0050441_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050441/mri/ibsr_sub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/v0/74/MD5E-s395312--bec29f2c1223730f09990fd982e2c795.nii.gz/MD5E-s395312--bec29f2c1223730f09990fd982e2c795.nii.gz

USM/sub-0050441/mri/it_sub-0050441_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/X6/mQ/MD5E-s283--2aaae8829de0a49614c6c1bb82c4ad18.mat/MD5E-s283--2aaae8829de0a49614c6c1bb82c4ad18.mat

USM/sub-0050441/mri/it_sub-0050441_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/KV/q3/MD5E-s283--9bba3598fbc1f7ae14280efe359cb5dc.mat/MD5E-s283--9bba3598fbc1f7ae14280efe359cb5dc.mat

USM/sub-0050441/mri/iy_sub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2p/MM/MD5E-s173675089--055818ce7f51b109f366cb27ce867d43.nii.gz/MD5E-s173675089--055818ce7f51b109f366cb27ce867d43.nii.gz

USM/sub-0050441/mri/julichbrain_sub-0050441_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050441/mri/julichbrain_sub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qz/92/MD5E-s488328--9bb7b670b716e7473174c25b52782011.nii.gz/MD5E-s488328--9bb7b670b716e7473174c25b52782011.nii.gz

USM/sub-0050441/mri/lpba40_sub-0050441_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050441/mri/lpba40_sub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z9/QW/MD5E-s364498--1df5be72cc25fd12dea2657e2f88f292.nii.gz/MD5E-s364498--1df5be72cc25fd12dea2657e2f88f292.nii.gz

USM/sub-0050441/mri/m0wp1sub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050441/mri/m0wp2sub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050441/mri/m0wp3sub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050441/mri/mori_sub-0050441_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

USM/sub-0050441/mri/mori_sub-0050441_T1w.nii.gz

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USM/sub-0050441/mri/mwp1sub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050441/mri/mwp2sub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050441/mri/mwp3sub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050441/mri/neuromorphometrics_sub-0050441_T1w.csv

@@ -0,0 +1 @@
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USM/sub-0050441/mri/neuromorphometrics_sub-0050441_T1w.nii.gz

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USM/sub-0050441/mri/p0sub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050441/mri/p1sub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050441/mri/p2sub-0050441_T1w.nii.gz

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USM/sub-0050441/mri/p3sub-0050441_T1w.nii.gz

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USM/sub-0050441/mri/rp1sub-0050441_T1w_affine.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050441/mri/rp2sub-0050441_T1w_affine.nii.gz

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USM/sub-0050441/mri/rp3sub-0050441_T1w_affine.nii.gz

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USM/sub-0050441/mri/t_sub-0050441_T1w_affine_reorient.mat

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USM/sub-0050441/mri/t_sub-0050441_T1w_rigid_reorient.mat

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+../../../.git/annex/objects/Gv/9F/MD5E-s284--e7702a24b68ca4413470271c394f9514.mat/MD5E-s284--e7702a24b68ca4413470271c394f9514.mat

USM/sub-0050441/mri/thalamus_sub-0050441_T1w.csv

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USM/sub-0050441/mri/thalamus_sub-0050441_T1w.nii.gz

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USM/sub-0050441/mri/wj_sub-0050441_T1w.nii.gz

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USM/sub-0050441/mri/wmisub-0050441_T1w.nii.gz

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USM/sub-0050441/mri/wmsub-0050441_T1w.nii.gz

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USM/sub-0050441/mri/wp0sub-0050441_T1w.nii.gz

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USM/sub-0050441/mri/wp1sub-0050441_T1w.nii.gz

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USM/sub-0050441/mri/wp2sub-0050441_T1w.nii.gz

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USM/sub-0050441/mri/wp3sub-0050441_T1w.nii.gz

@@ -0,0 +1 @@
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