[DATALAD RUNCMD] Compute UM_1/sub-0050313

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050313/anat/sub-0050313_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050313"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050313/label/catROI_sub-0050313_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/fQ/pk/MD5E-s61429--404cb446d7182301106ac35e1eeb57c5.mat/MD5E-s61429--404cb446d7182301106ac35e1eeb57c5.mat

UM_1/sub-0050313/label/catROI_sub-0050313_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/k1/Vm/MD5E-s189321--89f714528e0462f8a32995c764a23d30.xml/MD5E-s189321--89f714528e0462f8a32995c764a23d30.xml

UM_1/sub-0050313/label/catROIs_sub-0050313_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/J4/V8/MD5E-s120606--8e542c9569d408a2f343e9f02807d55d.mat/MD5E-s120606--8e542c9569d408a2f343e9f02807d55d.mat

UM_1/sub-0050313/label/catROIs_sub-0050313_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/7K/fm/MD5E-s332161--259a3c718a3421360a4fb68daee53949.xml/MD5E-s332161--259a3c718a3421360a4fb68daee53949.xml

UM_1/sub-0050313/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050313_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050313/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050313_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/5z/MD5E-s143398--6aff5063c6a270831f75f54fdd68714d.nii.gz/MD5E-s143398--6aff5063c6a270831f75f54fdd68714d.nii.gz

UM_1/sub-0050313/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050313_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_1/sub-0050313/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050313_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gJ/5V/MD5E-s160378--ad46028ca4664974bd710133a54dbbd7.nii.gz/MD5E-s160378--ad46028ca4664974bd710133a54dbbd7.nii.gz

UM_1/sub-0050313/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050313_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050313/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050313_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G8/qz/MD5E-s201719--4420b89b7761d5bf2243306f2ccd3701.nii.gz/MD5E-s201719--4420b89b7761d5bf2243306f2ccd3701.nii.gz

UM_1/sub-0050313/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050313_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050313/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050313_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p7/5K/MD5E-s225346--2b21255f573e46e497e7d7db681028ab.nii.gz/MD5E-s225346--2b21255f573e46e497e7d7db681028ab.nii.gz

UM_1/sub-0050313/mri/Tian_Subcortex_S2_7T_sub-0050313_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050313/mri/Tian_Subcortex_S2_7T_sub-0050313_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q9/9q/MD5E-s20075--fff013c6062815dd2cd5aaa8503416eb.nii.gz/MD5E-s20075--fff013c6062815dd2cd5aaa8503416eb.nii.gz

UM_1/sub-0050313/mri/aal3_sub-0050313_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

UM_1/sub-0050313/mri/aal3_sub-0050313_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V5/k1/MD5E-s160688--26ee41620742662d34b9384c94e78f8a.nii.gz/MD5E-s160688--26ee41620742662d34b9384c94e78f8a.nii.gz

UM_1/sub-0050313/mri/anatomy3_sub-0050313_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

UM_1/sub-0050313/mri/anatomy3_sub-0050313_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6M/J4/MD5E-s115167--75719f655376a93e2899659f08a4cda8.nii.gz/MD5E-s115167--75719f655376a93e2899659f08a4cda8.nii.gz

UM_1/sub-0050313/mri/anon_misub-0050313_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/60/5G/MD5E-s6328873--3c2cf44082ebb8f1f4ccb20b18432c5b.nii.gz/MD5E-s6328873--3c2cf44082ebb8f1f4ccb20b18432c5b.nii.gz

UM_1/sub-0050313/mri/anon_msub-0050313_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/21/2J/MD5E-s5381833--c18830b0b1ce99103f7a488d0f378d70.nii.gz/MD5E-s5381833--c18830b0b1ce99103f7a488d0f378d70.nii.gz

UM_1/sub-0050313/mri/cat_sub-0050313_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q3/kq/MD5E-s82321--b237fae1aab429b125a96d45e07cfa7d.nii.gz/MD5E-s82321--b237fae1aab429b125a96d45e07cfa7d.nii.gz

UM_1/sub-0050313/mri/cobra_sub-0050313_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050313/mri/cobra_sub-0050313_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xg/4v/MD5E-s40310--3d9136e0673f424230be6bef28ec68f9.nii.gz/MD5E-s40310--3d9136e0673f424230be6bef28ec68f9.nii.gz

UM_1/sub-0050313/mri/hammers_sub-0050313_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050313/mri/hammers_sub-0050313_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zk/Gg/MD5E-s125991--382af98ee49c4dd938aeee44b1c52ac4.nii.gz/MD5E-s125991--382af98ee49c4dd938aeee44b1c52ac4.nii.gz

UM_1/sub-0050313/mri/ibsr_sub-0050313_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

UM_1/sub-0050313/mri/ibsr_sub-0050313_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z5/qZ/MD5E-s130639--0c9dc23d3aa3f6e284a5827535a11c67.nii.gz/MD5E-s130639--0c9dc23d3aa3f6e284a5827535a11c67.nii.gz

UM_1/sub-0050313/mri/it_sub-0050313_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/g2/G1/MD5E-s283--a9f3445f49ca425ee5963054f2ff88c2.mat/MD5E-s283--a9f3445f49ca425ee5963054f2ff88c2.mat

UM_1/sub-0050313/mri/it_sub-0050313_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/MJ/mF/MD5E-s283--1841df60bfec142aa7d903a88b506b95.mat/MD5E-s283--1841df60bfec142aa7d903a88b506b95.mat

UM_1/sub-0050313/mri/iy_sub-0050313_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j2/Zq/MD5E-s33588385--6c131e747329177fef76bca450d9c4c1.nii.gz/MD5E-s33588385--6c131e747329177fef76bca450d9c4c1.nii.gz

UM_1/sub-0050313/mri/julichbrain_sub-0050313_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UM_1/sub-0050313/mri/julichbrain_sub-0050313_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1p/21/MD5E-s170839--b5f7c16b647bbe12d1472a608c58d316.nii.gz/MD5E-s170839--b5f7c16b647bbe12d1472a608c58d316.nii.gz

UM_1/sub-0050313/mri/lpba40_sub-0050313_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

UM_1/sub-0050313/mri/lpba40_sub-0050313_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050313/mri/m0wp1sub-0050313_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/30/44/MD5E-s2613293--3d6226a9fea5efc044853d6ecc456e3b.nii.gz/MD5E-s2613293--3d6226a9fea5efc044853d6ecc456e3b.nii.gz

UM_1/sub-0050313/mri/m0wp2sub-0050313_T1w.nii.gz

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UM_1/sub-0050313/mri/m0wp3sub-0050313_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050313/mri/mori_sub-0050313_T1w.csv

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UM_1/sub-0050313/mri/mori_sub-0050313_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050313/mri/mwp1sub-0050313_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050313/mri/mwp2sub-0050313_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050313/mri/mwp3sub-0050313_T1w.nii.gz

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UM_1/sub-0050313/mri/neuromorphometrics_sub-0050313_T1w.csv

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UM_1/sub-0050313/mri/neuromorphometrics_sub-0050313_T1w.nii.gz

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UM_1/sub-0050313/mri/p0sub-0050313_T1w.nii.gz

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UM_1/sub-0050313/mri/p1sub-0050313_T1w.nii.gz

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UM_1/sub-0050313/mri/p2sub-0050313_T1w.nii.gz

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UM_1/sub-0050313/mri/p3sub-0050313_T1w.nii.gz

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UM_1/sub-0050313/mri/rp1sub-0050313_T1w_affine.nii.gz

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UM_1/sub-0050313/mri/rp2sub-0050313_T1w_affine.nii.gz

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UM_1/sub-0050313/mri/rp3sub-0050313_T1w_affine.nii.gz

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UM_1/sub-0050313/mri/t_sub-0050313_T1w_affine_reorient.mat

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UM_1/sub-0050313/mri/t_sub-0050313_T1w_rigid_reorient.mat

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UM_1/sub-0050313/mri/thalamus_sub-0050313_T1w.csv

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UM_1/sub-0050313/mri/thalamus_sub-0050313_T1w.nii.gz

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UM_1/sub-0050313/mri/wj_sub-0050313_T1w.nii.gz

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UM_1/sub-0050313/mri/wmisub-0050313_T1w.nii.gz

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UM_1/sub-0050313/mri/wmsub-0050313_T1w.nii.gz

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UM_1/sub-0050313/mri/wp0sub-0050313_T1w.nii.gz

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UM_1/sub-0050313/mri/wp1sub-0050313_T1w.nii.gz

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UM_1/sub-0050313/mri/wp2sub-0050313_T1w.nii.gz

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