[DATALAD RUNCMD] Compute NYU/sub-0050995

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/NYU/sub-0050995/anat/sub-0050995_T1w.nii.gz"
 ],
 "outputs": [
  "NYU/sub-0050995"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU/sub-0050995/label/catROI_sub-0050995_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z5/K1/MD5E-s58106--929a210f6f73293c978dcd5b962993a4.mat/MD5E-s58106--929a210f6f73293c978dcd5b962993a4.mat

NYU/sub-0050995/label/catROI_sub-0050995_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/kg/8f/MD5E-s188821--aeb22a018f870b890c558f0af99f12f0.xml/MD5E-s188821--aeb22a018f870b890c558f0af99f12f0.xml

NYU/sub-0050995/label/catROIs_sub-0050995_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/M1/GZ/MD5E-s120169--1c17166eb51536c6121d6d493345cb7c.mat/MD5E-s120169--1c17166eb51536c6121d6d493345cb7c.mat

NYU/sub-0050995/label/catROIs_sub-0050995_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/Mq/MD5E-s332132--fef0d1589554da27f8e8b9c799160c45.xml/MD5E-s332132--fef0d1589554da27f8e8b9c799160c45.xml

NYU/sub-0050995/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050995_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU/sub-0050995/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050995_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1P/Pj/MD5E-s156803--3018823f273f0b5ab015483f3cc8280d.nii.gz/MD5E-s156803--3018823f273f0b5ab015483f3cc8280d.nii.gz

NYU/sub-0050995/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050995_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU/sub-0050995/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050995_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7g/WQ/MD5E-s175132--a44bb6a770c15c3297457ecc91e8a8e7.nii.gz/MD5E-s175132--a44bb6a770c15c3297457ecc91e8a8e7.nii.gz

NYU/sub-0050995/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050995_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU/sub-0050995/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050995_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0J/5p/MD5E-s235890--4ee63c70e8244475599a66ac03cc94f0.nii.gz/MD5E-s235890--4ee63c70e8244475599a66ac03cc94f0.nii.gz

NYU/sub-0050995/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050995_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU/sub-0050995/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050995_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K4/k8/MD5E-s261976--d27dbddd8cc1ac85961540dbe79b5e50.nii.gz/MD5E-s261976--d27dbddd8cc1ac85961540dbe79b5e50.nii.gz

NYU/sub-0050995/mri/Tian_Subcortex_S2_7T_sub-0050995_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU/sub-0050995/mri/Tian_Subcortex_S2_7T_sub-0050995_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8X/W7/MD5E-s19769--2517c00f37415220c8f3c2aeb8085c18.nii.gz/MD5E-s19769--2517c00f37415220c8f3c2aeb8085c18.nii.gz

NYU/sub-0050995/mri/aal3_sub-0050995_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

NYU/sub-0050995/mri/aal3_sub-0050995_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9Z/1F/MD5E-s176137--f960be035451d4bc17e952dcca47f4c2.nii.gz/MD5E-s176137--f960be035451d4bc17e952dcca47f4c2.nii.gz

NYU/sub-0050995/mri/anatomy3_sub-0050995_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

NYU/sub-0050995/mri/anatomy3_sub-0050995_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/46/5P/MD5E-s124653--be272c4002a6738c74647b6cb255f471.nii.gz/MD5E-s124653--be272c4002a6738c74647b6cb255f471.nii.gz

NYU/sub-0050995/mri/anon_misub-0050995_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gm/WF/MD5E-s4281612--1201f6a0f9b264fe4e9184e421b1e4aa.nii.gz/MD5E-s4281612--1201f6a0f9b264fe4e9184e421b1e4aa.nii.gz

NYU/sub-0050995/mri/anon_msub-0050995_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p4/Wq/MD5E-s9583617--3b1e79f88ac6d455ff49ad43ab804157.nii.gz/MD5E-s9583617--3b1e79f88ac6d455ff49ad43ab804157.nii.gz

NYU/sub-0050995/mri/cat_sub-0050995_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/70/F6/MD5E-s93519--a9c26c6345781e3dc652d00f204550bd.nii.gz/MD5E-s93519--a9c26c6345781e3dc652d00f204550bd.nii.gz

NYU/sub-0050995/mri/cobra_sub-0050995_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU/sub-0050995/mri/cobra_sub-0050995_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mV/GW/MD5E-s40826--b3dfc1bcd284b32d045ae20354609f30.nii.gz/MD5E-s40826--b3dfc1bcd284b32d045ae20354609f30.nii.gz

NYU/sub-0050995/mri/hammers_sub-0050995_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU/sub-0050995/mri/hammers_sub-0050995_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qk/kp/MD5E-s137851--ee5091cdca353cfe9976edf3b0a70ce3.nii.gz/MD5E-s137851--ee5091cdca353cfe9976edf3b0a70ce3.nii.gz

NYU/sub-0050995/mri/ibsr_sub-0050995_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

NYU/sub-0050995/mri/ibsr_sub-0050995_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k5/w5/MD5E-s145306--a2cc875a35a9ad87ec7f9b3ff87e7188.nii.gz/MD5E-s145306--a2cc875a35a9ad87ec7f9b3ff87e7188.nii.gz

NYU/sub-0050995/mri/it_sub-0050995_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/90/pK/MD5E-s283--9d6b7c2c89f126cf7439909ace315831.mat/MD5E-s283--9d6b7c2c89f126cf7439909ace315831.mat

NYU/sub-0050995/mri/it_sub-0050995_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/82/pk/MD5E-s284--12ecbcf55c3008df4f203d1133bade53.mat/MD5E-s284--12ecbcf55c3008df4f203d1133bade53.mat

NYU/sub-0050995/mri/iy_sub-0050995_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3j/36/MD5E-s37626320--7c596ac83a9e48428ea2cc6411251a8d.nii.gz/MD5E-s37626320--7c596ac83a9e48428ea2cc6411251a8d.nii.gz

NYU/sub-0050995/mri/julichbrain_sub-0050995_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU/sub-0050995/mri/julichbrain_sub-0050995_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V4/K5/MD5E-s185717--bf1f7ad5b9b4353ec92409810048bab3.nii.gz/MD5E-s185717--bf1f7ad5b9b4353ec92409810048bab3.nii.gz

NYU/sub-0050995/mri/lpba40_sub-0050995_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

NYU/sub-0050995/mri/lpba40_sub-0050995_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gv/kq/MD5E-s134431--ad44e070e3ab206a06fbc0409f049ef3.nii.gz/MD5E-s134431--ad44e070e3ab206a06fbc0409f049ef3.nii.gz

NYU/sub-0050995/mri/m0wp1sub-0050995_T1w.nii.gz

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NYU/sub-0050995/mri/m0wp2sub-0050995_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0v/PJ/MD5E-s2263059--6e42980387570d21f5a059086aea3951.nii.gz/MD5E-s2263059--6e42980387570d21f5a059086aea3951.nii.gz

NYU/sub-0050995/mri/m0wp3sub-0050995_T1w.nii.gz

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NYU/sub-0050995/mri/mori_sub-0050995_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

NYU/sub-0050995/mri/mori_sub-0050995_T1w.nii.gz

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NYU/sub-0050995/mri/mwp1sub-0050995_T1w.nii.gz

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NYU/sub-0050995/mri/mwp2sub-0050995_T1w.nii.gz

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NYU/sub-0050995/mri/mwp3sub-0050995_T1w.nii.gz

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NYU/sub-0050995/mri/neuromorphometrics_sub-0050995_T1w.csv

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NYU/sub-0050995/mri/neuromorphometrics_sub-0050995_T1w.nii.gz

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NYU/sub-0050995/mri/p0sub-0050995_T1w.nii.gz

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NYU/sub-0050995/mri/p1sub-0050995_T1w.nii.gz

@@ -0,0 +1 @@
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NYU/sub-0050995/mri/p2sub-0050995_T1w.nii.gz

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NYU/sub-0050995/mri/p3sub-0050995_T1w.nii.gz

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NYU/sub-0050995/mri/rp1sub-0050995_T1w_affine.nii.gz

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NYU/sub-0050995/mri/rp2sub-0050995_T1w_affine.nii.gz

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NYU/sub-0050995/mri/rp3sub-0050995_T1w_affine.nii.gz

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NYU/sub-0050995/mri/t_sub-0050995_T1w_affine_reorient.mat

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NYU/sub-0050995/mri/t_sub-0050995_T1w_rigid_reorient.mat

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NYU/sub-0050995/mri/thalamus_sub-0050995_T1w.csv

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NYU/sub-0050995/mri/thalamus_sub-0050995_T1w.nii.gz

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NYU/sub-0050995/mri/wj_sub-0050995_T1w.nii.gz

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NYU/sub-0050995/mri/wmisub-0050995_T1w.nii.gz

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NYU/sub-0050995/mri/wmsub-0050995_T1w.nii.gz

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NYU/sub-0050995/mri/wp0sub-0050995_T1w.nii.gz

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NYU/sub-0050995/mri/wp1sub-0050995_T1w.nii.gz

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NYU/sub-0050995/mri/wp2sub-0050995_T1w.nii.gz

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NYU/sub-0050995/mri/wp3sub-0050995_T1w.nii.gz

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