[DATALAD RUNCMD] Compute KKI/sub-0050816

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/KKI/sub-0050816/anat/sub-0050816_T1w.nii.gz"
 ],
 "outputs": [
  "KKI/sub-0050816"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

KKI/sub-0050816/label/catROI_sub-0050816_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qj/zK/MD5E-s61359--6be16387eabb4757a9d33f8705cac4e2.mat/MD5E-s61359--6be16387eabb4757a9d33f8705cac4e2.mat

KKI/sub-0050816/label/catROI_sub-0050816_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/JZ/VX/MD5E-s188957--0349ba4ddeff975b9496af357be6fb96.xml/MD5E-s188957--0349ba4ddeff975b9496af357be6fb96.xml

KKI/sub-0050816/label/catROIs_sub-0050816_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/1M/pv/MD5E-s120192--addf76447331866f4dfc4473e179daa7.mat/MD5E-s120192--addf76447331866f4dfc4473e179daa7.mat

KKI/sub-0050816/label/catROIs_sub-0050816_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/f8/gw/MD5E-s332162--24a6ca00a69cdcc7ce53d25df162e077.xml/MD5E-s332162--24a6ca00a69cdcc7ce53d25df162e077.xml

KKI/sub-0050816/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050816_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

KKI/sub-0050816/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050816_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K7/vF/MD5E-s188528--74da7d2a33bf868240abfa0470df0164.nii.gz/MD5E-s188528--74da7d2a33bf868240abfa0470df0164.nii.gz

KKI/sub-0050816/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050816_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

KKI/sub-0050816/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050816_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M5/5P/MD5E-s210128--1a770d5f9a134cb8ad8c9347683c5288.nii.gz/MD5E-s210128--1a770d5f9a134cb8ad8c9347683c5288.nii.gz

KKI/sub-0050816/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050816_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

KKI/sub-0050816/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050816_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gv/xM/MD5E-s269126--6fbdf063c1a4f753304280c0021a041c.nii.gz/MD5E-s269126--6fbdf063c1a4f753304280c0021a041c.nii.gz

KKI/sub-0050816/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050816_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

KKI/sub-0050816/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050816_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1Q/m4/MD5E-s299288--e4b6ada1d2b0c4ba1105343cdecef3ce.nii.gz/MD5E-s299288--e4b6ada1d2b0c4ba1105343cdecef3ce.nii.gz

KKI/sub-0050816/mri/Tian_Subcortex_S2_7T_sub-0050816_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

KKI/sub-0050816/mri/Tian_Subcortex_S2_7T_sub-0050816_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9K/kg/MD5E-s27313--2251ca9fd99ddfbc9a5c82b87fbf1f84.nii.gz/MD5E-s27313--2251ca9fd99ddfbc9a5c82b87fbf1f84.nii.gz

KKI/sub-0050816/mri/aal3_sub-0050816_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

KKI/sub-0050816/mri/aal3_sub-0050816_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050816/mri/anatomy3_sub-0050816_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

KKI/sub-0050816/mri/anatomy3_sub-0050816_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pg/MZ/MD5E-s153718--ccd24c04f0e8e04d4fef30dd864c78f3.nii.gz/MD5E-s153718--ccd24c04f0e8e04d4fef30dd864c78f3.nii.gz

KKI/sub-0050816/mri/anon_misub-0050816_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7J/wK/MD5E-s4708739--4f24a207b06c0574228fee809a3377a5.nii.gz/MD5E-s4708739--4f24a207b06c0574228fee809a3377a5.nii.gz

KKI/sub-0050816/mri/anon_msub-0050816_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x9/PX/MD5E-s12645515--6a4abef5203bfa00c42c91bd7c181c0a.nii.gz/MD5E-s12645515--6a4abef5203bfa00c42c91bd7c181c0a.nii.gz

KKI/sub-0050816/mri/cat_sub-0050816_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/75/39/MD5E-s115696--da4186c10cfae5c9da95be067c6a9a4d.nii.gz/MD5E-s115696--da4186c10cfae5c9da95be067c6a9a4d.nii.gz

KKI/sub-0050816/mri/cobra_sub-0050816_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

KKI/sub-0050816/mri/cobra_sub-0050816_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050816/mri/hammers_sub-0050816_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

KKI/sub-0050816/mri/hammers_sub-0050816_T1w.nii.gz

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KKI/sub-0050816/mri/ibsr_sub-0050816_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

KKI/sub-0050816/mri/ibsr_sub-0050816_T1w.nii.gz

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KKI/sub-0050816/mri/it_sub-0050816_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/VP/MD5E-s282--9c5611860c6a1ae5c5da13a3d27588b4.mat/MD5E-s282--9c5611860c6a1ae5c5da13a3d27588b4.mat

KKI/sub-0050816/mri/it_sub-0050816_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/qK/wk/MD5E-s283--14cbdba9123cc61b76d2f3bfbbee1275.mat/MD5E-s283--14cbdba9123cc61b76d2f3bfbbee1275.mat

KKI/sub-0050816/mri/iy_sub-0050816_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0v/PQ/MD5E-s43665647--1356271e645683c1a25e1cca00f82959.nii.gz/MD5E-s43665647--1356271e645683c1a25e1cca00f82959.nii.gz

KKI/sub-0050816/mri/julichbrain_sub-0050816_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

KKI/sub-0050816/mri/julichbrain_sub-0050816_T1w.nii.gz

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+../../../.git/annex/objects/pg/q1/MD5E-s224212--7d4a58d6bf66a1ec585ebcbc7bc852eb.nii.gz/MD5E-s224212--7d4a58d6bf66a1ec585ebcbc7bc852eb.nii.gz

KKI/sub-0050816/mri/lpba40_sub-0050816_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

KKI/sub-0050816/mri/lpba40_sub-0050816_T1w.nii.gz

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KKI/sub-0050816/mri/m0wp1sub-0050816_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050816/mri/m0wp2sub-0050816_T1w.nii.gz

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KKI/sub-0050816/mri/m0wp3sub-0050816_T1w.nii.gz

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KKI/sub-0050816/mri/mori_sub-0050816_T1w.csv

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KKI/sub-0050816/mri/mori_sub-0050816_T1w.nii.gz

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KKI/sub-0050816/mri/mwp1sub-0050816_T1w.nii.gz

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KKI/sub-0050816/mri/mwp2sub-0050816_T1w.nii.gz

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KKI/sub-0050816/mri/mwp3sub-0050816_T1w.nii.gz

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KKI/sub-0050816/mri/neuromorphometrics_sub-0050816_T1w.csv

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KKI/sub-0050816/mri/neuromorphometrics_sub-0050816_T1w.nii.gz

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KKI/sub-0050816/mri/p0sub-0050816_T1w.nii.gz

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KKI/sub-0050816/mri/p1sub-0050816_T1w.nii.gz

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KKI/sub-0050816/mri/p2sub-0050816_T1w.nii.gz

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KKI/sub-0050816/mri/p3sub-0050816_T1w.nii.gz

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KKI/sub-0050816/mri/rp1sub-0050816_T1w_affine.nii.gz

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KKI/sub-0050816/mri/rp2sub-0050816_T1w_affine.nii.gz

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KKI/sub-0050816/mri/rp3sub-0050816_T1w_affine.nii.gz

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KKI/sub-0050816/mri/t_sub-0050816_T1w_affine_reorient.mat

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KKI/sub-0050816/mri/t_sub-0050816_T1w_rigid_reorient.mat

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KKI/sub-0050816/mri/thalamus_sub-0050816_T1w.csv

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KKI/sub-0050816/mri/thalamus_sub-0050816_T1w.nii.gz

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KKI/sub-0050816/mri/wj_sub-0050816_T1w.nii.gz

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KKI/sub-0050816/mri/wmisub-0050816_T1w.nii.gz

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KKI/sub-0050816/mri/wmsub-0050816_T1w.nii.gz

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KKI/sub-0050816/mri/wp0sub-0050816_T1w.nii.gz

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KKI/sub-0050816/mri/wp1sub-0050816_T1w.nii.gz

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KKI/sub-0050816/mri/wp2sub-0050816_T1w.nii.gz

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