[DATALAD RUNCMD] Compute Trinity/sub-0050261

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Trinity/sub-0050261/anat/sub-0050261_T1w.nii.gz"
 ],
 "outputs": [
  "Trinity/sub-0050261"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Trinity/sub-0050261/label/catROI_sub-0050261_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/q0/pF/MD5E-s61321--5e6f83d04258d1228b450c15c87f835f.mat/MD5E-s61321--5e6f83d04258d1228b450c15c87f835f.mat

Trinity/sub-0050261/label/catROI_sub-0050261_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q8/6G/MD5E-s188511--fc52fe68839406f8f0a41cf9a853f332.xml/MD5E-s188511--fc52fe68839406f8f0a41cf9a853f332.xml

Trinity/sub-0050261/label/catROIs_sub-0050261_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/kP/p5/MD5E-s120003--431e5510e9ed2902001534c4d917e7ec.mat/MD5E-s120003--431e5510e9ed2902001534c4d917e7ec.mat

Trinity/sub-0050261/label/catROIs_sub-0050261_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pm/96/MD5E-s332143--21dab102997383e0dd83f5a1cb004b68.xml/MD5E-s332143--21dab102997383e0dd83f5a1cb004b68.xml

Trinity/sub-0050261/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050261_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Trinity/sub-0050261/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050261_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k0/7k/MD5E-s180832--c3fb41c8a3927e5a4e8482336eb259b7.nii.gz/MD5E-s180832--c3fb41c8a3927e5a4e8482336eb259b7.nii.gz

Trinity/sub-0050261/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050261_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Trinity/sub-0050261/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050261_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J4/XP/MD5E-s202353--f2224e01cebd25bc7d68a59d4911413e.nii.gz/MD5E-s202353--f2224e01cebd25bc7d68a59d4911413e.nii.gz

Trinity/sub-0050261/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050261_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Trinity/sub-0050261/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050261_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/15/Jf/MD5E-s273759--4eabc76b242b1f33a95c0b4d54bf10d3.nii.gz/MD5E-s273759--4eabc76b242b1f33a95c0b4d54bf10d3.nii.gz

Trinity/sub-0050261/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050261_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Trinity/sub-0050261/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050261_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5M/pW/MD5E-s303239--d892a569b714f70bebc16e7776242341.nii.gz/MD5E-s303239--d892a569b714f70bebc16e7776242341.nii.gz

Trinity/sub-0050261/mri/Tian_Subcortex_S2_7T_sub-0050261_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Trinity/sub-0050261/mri/Tian_Subcortex_S2_7T_sub-0050261_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7X/Mm/MD5E-s24629--fe2fff807c6f8062e048036eec607b83.nii.gz/MD5E-s24629--fe2fff807c6f8062e048036eec607b83.nii.gz

Trinity/sub-0050261/mri/aal3_sub-0050261_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050261/mri/aal3_sub-0050261_T1w.nii.gz

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Trinity/sub-0050261/mri/anatomy3_sub-0050261_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050261/mri/anatomy3_sub-0050261_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5W/ZF/MD5E-s145648--7f34ba6ce633a84cdca87144c252d366.nii.gz/MD5E-s145648--7f34ba6ce633a84cdca87144c252d366.nii.gz

Trinity/sub-0050261/mri/anon_misub-0050261_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050261/mri/anon_msub-0050261_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2k/p0/MD5E-s9331476--0efaed20966fe97c4c34446a1827d835.nii.gz/MD5E-s9331476--0efaed20966fe97c4c34446a1827d835.nii.gz

Trinity/sub-0050261/mri/cat_sub-0050261_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4M/0V/MD5E-s106280--fac20bd956288cb07d52ac00b25cc3d1.nii.gz/MD5E-s106280--fac20bd956288cb07d52ac00b25cc3d1.nii.gz

Trinity/sub-0050261/mri/cobra_sub-0050261_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Trinity/sub-0050261/mri/cobra_sub-0050261_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5X/W9/MD5E-s49175--5d1c6110226ad21e3459defba3bb804d.nii.gz/MD5E-s49175--5d1c6110226ad21e3459defba3bb804d.nii.gz

Trinity/sub-0050261/mri/hammers_sub-0050261_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Trinity/sub-0050261/mri/hammers_sub-0050261_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050261/mri/ibsr_sub-0050261_T1w.csv

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Trinity/sub-0050261/mri/ibsr_sub-0050261_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050261/mri/it_sub-0050261_T1w_affine_reorient.mat

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Trinity/sub-0050261/mri/it_sub-0050261_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/p7/1M/MD5E-s283--dcec2ec5e72011c45213f47251303f51.mat/MD5E-s283--dcec2ec5e72011c45213f47251303f51.mat

Trinity/sub-0050261/mri/iy_sub-0050261_T1w.nii.gz

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Trinity/sub-0050261/mri/julichbrain_sub-0050261_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Trinity/sub-0050261/mri/julichbrain_sub-0050261_T1w.nii.gz

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Trinity/sub-0050261/mri/lpba40_sub-0050261_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050261/mri/lpba40_sub-0050261_T1w.nii.gz

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Trinity/sub-0050261/mri/m0wp1sub-0050261_T1w.nii.gz

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Trinity/sub-0050261/mri/m0wp2sub-0050261_T1w.nii.gz

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Trinity/sub-0050261/mri/m0wp3sub-0050261_T1w.nii.gz

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Trinity/sub-0050261/mri/mori_sub-0050261_T1w.csv

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Trinity/sub-0050261/mri/mori_sub-0050261_T1w.nii.gz

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Trinity/sub-0050261/mri/mwp1sub-0050261_T1w.nii.gz

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Trinity/sub-0050261/mri/mwp2sub-0050261_T1w.nii.gz

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Trinity/sub-0050261/mri/mwp3sub-0050261_T1w.nii.gz

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Trinity/sub-0050261/mri/neuromorphometrics_sub-0050261_T1w.csv

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Trinity/sub-0050261/mri/neuromorphometrics_sub-0050261_T1w.nii.gz

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Trinity/sub-0050261/mri/p0sub-0050261_T1w.nii.gz

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Trinity/sub-0050261/mri/p1sub-0050261_T1w.nii.gz

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Trinity/sub-0050261/mri/p2sub-0050261_T1w.nii.gz

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Trinity/sub-0050261/mri/p3sub-0050261_T1w.nii.gz

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Trinity/sub-0050261/mri/rp1sub-0050261_T1w_affine.nii.gz

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Trinity/sub-0050261/mri/rp2sub-0050261_T1w_affine.nii.gz

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Trinity/sub-0050261/mri/rp3sub-0050261_T1w_affine.nii.gz

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Trinity/sub-0050261/mri/t_sub-0050261_T1w_affine_reorient.mat

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Trinity/sub-0050261/mri/t_sub-0050261_T1w_rigid_reorient.mat

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Trinity/sub-0050261/mri/thalamus_sub-0050261_T1w.csv

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Trinity/sub-0050261/mri/thalamus_sub-0050261_T1w.nii.gz

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Trinity/sub-0050261/mri/wj_sub-0050261_T1w.nii.gz

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Trinity/sub-0050261/mri/wmisub-0050261_T1w.nii.gz

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Trinity/sub-0050261/mri/wmsub-0050261_T1w.nii.gz

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Trinity/sub-0050261/mri/wp0sub-0050261_T1w.nii.gz

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Trinity/sub-0050261/mri/wp1sub-0050261_T1w.nii.gz

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Trinity/sub-0050261/mri/wp2sub-0050261_T1w.nii.gz

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Trinity/sub-0050261/mri/wp3sub-0050261_T1w.nii.gz

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