[DATALAD RUNCMD] Compute Yale/sub-0050612

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Yale/sub-0050612/anat/sub-0050612_T1w.nii.gz"
 ],
 "outputs": [
  "Yale/sub-0050612"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Yale/sub-0050612/label/catROI_sub-0050612_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/7M/3j/MD5E-s58082--11ca12d3d7074069a9335c0761a4f13a.mat/MD5E-s58082--11ca12d3d7074069a9335c0761a4f13a.mat

Yale/sub-0050612/label/catROI_sub-0050612_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/4v/8f/MD5E-s188832--e759a09d68d2016dfa273e3d464e74a4.xml/MD5E-s188832--e759a09d68d2016dfa273e3d464e74a4.xml

Yale/sub-0050612/label/catROIs_sub-0050612_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/VP/gz/MD5E-s118804--a5c58a559f646452b0e2ce4fd2883d97.mat/MD5E-s118804--a5c58a559f646452b0e2ce4fd2883d97.mat

Yale/sub-0050612/label/catROIs_sub-0050612_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/6G/Qw/MD5E-s328765--a7e911ad18481e1c14dd0b64d2375138.xml/MD5E-s328765--a7e911ad18481e1c14dd0b64d2375138.xml

Yale/sub-0050612/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050612_T1w.csv

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Yale/sub-0050612/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050612_T1w.csv

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Yale/sub-0050612/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050612_T1w.nii.gz

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+../../../.git/annex/objects/k1/v7/MD5E-s200621--487aae3694ed9cc3516c3b7c8e40f81d.nii.gz/MD5E-s200621--487aae3694ed9cc3516c3b7c8e40f81d.nii.gz

Yale/sub-0050612/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050612_T1w.csv

@@ -0,0 +1 @@
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Yale/sub-0050612/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050612_T1w.csv

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Yale/sub-0050612/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/Tian_Subcortex_S2_7T_sub-0050612_T1w.csv

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Yale/sub-0050612/mri/Tian_Subcortex_S2_7T_sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/aal3_sub-0050612_T1w.csv

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Yale/sub-0050612/mri/aal3_sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/anatomy3_sub-0050612_T1w.csv

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Yale/sub-0050612/mri/anatomy3_sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/anon_misub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/anon_msub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/cat_sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/cobra_sub-0050612_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Yale/sub-0050612/mri/cobra_sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/hammers_sub-0050612_T1w.csv

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+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Yale/sub-0050612/mri/hammers_sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/ibsr_sub-0050612_T1w.csv

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Yale/sub-0050612/mri/ibsr_sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/it_sub-0050612_T1w_affine_reorient.mat

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Yale/sub-0050612/mri/it_sub-0050612_T1w_rigid_reorient.mat

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Yale/sub-0050612/mri/iy_sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/julichbrain_sub-0050612_T1w.csv

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Yale/sub-0050612/mri/julichbrain_sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/lpba40_sub-0050612_T1w.csv

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Yale/sub-0050612/mri/lpba40_sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/m0wp1sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/m0wp2sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/m0wp3sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/mori_sub-0050612_T1w.csv

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Yale/sub-0050612/mri/mori_sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/mwp1sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/mwp2sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/mwp3sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/neuromorphometrics_sub-0050612_T1w.csv

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Yale/sub-0050612/mri/neuromorphometrics_sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/p0sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/p1sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/p2sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/p3sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/rp1sub-0050612_T1w_affine.nii.gz

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Yale/sub-0050612/mri/rp2sub-0050612_T1w_affine.nii.gz

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Yale/sub-0050612/mri/rp3sub-0050612_T1w_affine.nii.gz

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Yale/sub-0050612/mri/t_sub-0050612_T1w_affine_reorient.mat

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Yale/sub-0050612/mri/t_sub-0050612_T1w_rigid_reorient.mat

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Yale/sub-0050612/mri/thalamus_sub-0050612_T1w.csv

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Yale/sub-0050612/mri/thalamus_sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/wj_sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/wmisub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/wmsub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/wp0sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/wp1sub-0050612_T1w.nii.gz

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Yale/sub-0050612/mri/wp2sub-0050612_T1w.nii.gz

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