[DATALAD RUNCMD] Compute UM_2/sub-0050406

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_2/sub-0050406/anat/sub-0050406_T1w.nii.gz"
 ],
 "outputs": [
  "UM_2/sub-0050406"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_2/sub-0050406/label/catROI_sub-0050406_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/XK/V6/MD5E-s58165--c113e24b5d175c7aea9fc90ba0c28bb2.mat/MD5E-s58165--c113e24b5d175c7aea9fc90ba0c28bb2.mat

UM_2/sub-0050406/label/catROI_sub-0050406_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/x9/55/MD5E-s188756--f2ba2dbabd471e308dcd5c68ddba63aa.xml/MD5E-s188756--f2ba2dbabd471e308dcd5c68ddba63aa.xml

UM_2/sub-0050406/label/catROIs_sub-0050406_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/2w/G2/MD5E-s120042--329288dcff5fad32d2228e93dfb175e0.mat/MD5E-s120042--329288dcff5fad32d2228e93dfb175e0.mat

UM_2/sub-0050406/label/catROIs_sub-0050406_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/M6/fv/MD5E-s332145--e272d59debb405f43ddc0b5be536c730.xml/MD5E-s332145--e272d59debb405f43ddc0b5be536c730.xml

UM_2/sub-0050406/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050406_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_2/sub-0050406/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050406_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xM/jw/MD5E-s138259--76dc931e981dfa9a4e020a413a05928c.nii.gz/MD5E-s138259--76dc931e981dfa9a4e020a413a05928c.nii.gz

UM_2/sub-0050406/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050406_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_2/sub-0050406/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050406_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1K/wj/MD5E-s154896--c34dbd8a0e022adcc779f2fa02864b42.nii.gz/MD5E-s154896--c34dbd8a0e022adcc779f2fa02864b42.nii.gz

UM_2/sub-0050406/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050406_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_2/sub-0050406/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050406_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kk/vX/MD5E-s215598--894bcdb2aaf19038a762a5059d2680c3.nii.gz/MD5E-s215598--894bcdb2aaf19038a762a5059d2680c3.nii.gz

UM_2/sub-0050406/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050406_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_2/sub-0050406/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050406_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3Z/v1/MD5E-s237688--569197eda6472eb40174fc6bff5915ad.nii.gz/MD5E-s237688--569197eda6472eb40174fc6bff5915ad.nii.gz

UM_2/sub-0050406/mri/Tian_Subcortex_S2_7T_sub-0050406_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_2/sub-0050406/mri/Tian_Subcortex_S2_7T_sub-0050406_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qj/16/MD5E-s16070--09682936457ce9abd87ecef5b6b3e0fb.nii.gz/MD5E-s16070--09682936457ce9abd87ecef5b6b3e0fb.nii.gz

UM_2/sub-0050406/mri/aal3_sub-0050406_T1w.csv

@@ -0,0 +1 @@
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UM_2/sub-0050406/mri/aal3_sub-0050406_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f4/zF/MD5E-s157725--b99586d58f48cd18b82659b9e7e173d4.nii.gz/MD5E-s157725--b99586d58f48cd18b82659b9e7e173d4.nii.gz

UM_2/sub-0050406/mri/anatomy3_sub-0050406_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

UM_2/sub-0050406/mri/anatomy3_sub-0050406_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1m/v6/MD5E-s108967--f537f9a69f9045d13c407e48db558241.nii.gz/MD5E-s108967--f537f9a69f9045d13c407e48db558241.nii.gz

UM_2/sub-0050406/mri/anon_misub-0050406_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050406/mri/anon_msub-0050406_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3P/v5/MD5E-s5338008--70d935a718d8dd559c35fff5bc27a366.nii.gz/MD5E-s5338008--70d935a718d8dd559c35fff5bc27a366.nii.gz

UM_2/sub-0050406/mri/cat_sub-0050406_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7w/zW/MD5E-s79978--dc5bcc05bdd2c35ad8f10c02b4b98cbf.nii.gz/MD5E-s79978--dc5bcc05bdd2c35ad8f10c02b4b98cbf.nii.gz

UM_2/sub-0050406/mri/cobra_sub-0050406_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_2/sub-0050406/mri/cobra_sub-0050406_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/75/f3/MD5E-s37325--9f08b732e4216b01d43f73b447251803.nii.gz/MD5E-s37325--9f08b732e4216b01d43f73b447251803.nii.gz

UM_2/sub-0050406/mri/hammers_sub-0050406_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_2/sub-0050406/mri/hammers_sub-0050406_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2k/6Z/MD5E-s119501--40d282e16b89a1a69fd08bdc2b60e95a.nii.gz/MD5E-s119501--40d282e16b89a1a69fd08bdc2b60e95a.nii.gz

UM_2/sub-0050406/mri/ibsr_sub-0050406_T1w.csv

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+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

UM_2/sub-0050406/mri/ibsr_sub-0050406_T1w.nii.gz

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+../../../.git/annex/objects/F2/F8/MD5E-s132914--3988f0a8a367e32fb16848d3ff33276d.nii.gz/MD5E-s132914--3988f0a8a367e32fb16848d3ff33276d.nii.gz

UM_2/sub-0050406/mri/it_sub-0050406_T1w_affine_reorient.mat

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+../../../.git/annex/objects/vk/jx/MD5E-s282--5c2f59c0540f64e9120342cdab55001c.mat/MD5E-s282--5c2f59c0540f64e9120342cdab55001c.mat

UM_2/sub-0050406/mri/it_sub-0050406_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/GQ/p9/MD5E-s281--becd7b6b0f7d725ebf8173fa47bb812e.mat/MD5E-s281--becd7b6b0f7d725ebf8173fa47bb812e.mat

UM_2/sub-0050406/mri/iy_sub-0050406_T1w.nii.gz

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UM_2/sub-0050406/mri/julichbrain_sub-0050406_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UM_2/sub-0050406/mri/julichbrain_sub-0050406_T1w.nii.gz

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UM_2/sub-0050406/mri/lpba40_sub-0050406_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

UM_2/sub-0050406/mri/lpba40_sub-0050406_T1w.nii.gz

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UM_2/sub-0050406/mri/m0wp1sub-0050406_T1w.nii.gz

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UM_2/sub-0050406/mri/m0wp2sub-0050406_T1w.nii.gz

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UM_2/sub-0050406/mri/m0wp3sub-0050406_T1w.nii.gz

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UM_2/sub-0050406/mri/mori_sub-0050406_T1w.csv

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UM_2/sub-0050406/mri/mori_sub-0050406_T1w.nii.gz

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UM_2/sub-0050406/mri/mwp1sub-0050406_T1w.nii.gz

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UM_2/sub-0050406/mri/mwp2sub-0050406_T1w.nii.gz

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UM_2/sub-0050406/mri/mwp3sub-0050406_T1w.nii.gz

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UM_2/sub-0050406/mri/neuromorphometrics_sub-0050406_T1w.csv

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UM_2/sub-0050406/mri/neuromorphometrics_sub-0050406_T1w.nii.gz

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UM_2/sub-0050406/mri/p0sub-0050406_T1w.nii.gz

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UM_2/sub-0050406/mri/p1sub-0050406_T1w.nii.gz

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UM_2/sub-0050406/mri/p2sub-0050406_T1w.nii.gz

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UM_2/sub-0050406/mri/p3sub-0050406_T1w.nii.gz

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UM_2/sub-0050406/mri/rp1sub-0050406_T1w_affine.nii.gz

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UM_2/sub-0050406/mri/rp2sub-0050406_T1w_affine.nii.gz

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UM_2/sub-0050406/mri/rp3sub-0050406_T1w_affine.nii.gz

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UM_2/sub-0050406/mri/t_sub-0050406_T1w_affine_reorient.mat

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UM_2/sub-0050406/mri/t_sub-0050406_T1w_rigid_reorient.mat

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UM_2/sub-0050406/mri/thalamus_sub-0050406_T1w.csv

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UM_2/sub-0050406/mri/thalamus_sub-0050406_T1w.nii.gz

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UM_2/sub-0050406/mri/wj_sub-0050406_T1w.nii.gz

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UM_2/sub-0050406/mri/wmisub-0050406_T1w.nii.gz

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UM_2/sub-0050406/mri/wmsub-0050406_T1w.nii.gz

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UM_2/sub-0050406/mri/wp0sub-0050406_T1w.nii.gz

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UM_2/sub-0050406/mri/wp1sub-0050406_T1w.nii.gz

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UM_2/sub-0050406/mri/wp2sub-0050406_T1w.nii.gz

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UM_2/sub-0050406/mri/wp3sub-0050406_T1w.nii.gz

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