[DATALAD RUNCMD] Compute Leuven_2/sub-0050740

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Leuven_2/sub-0050740/anat/sub-0050740_T1w.nii.gz"
 ],
 "outputs": [
  "Leuven_2/sub-0050740"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Leuven_2/sub-0050740/label/catROI_sub-0050740_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/7v/m2/MD5E-s61392--576f1d0851016a418979f27dc056b692.mat/MD5E-s61392--576f1d0851016a418979f27dc056b692.mat

Leuven_2/sub-0050740/label/catROI_sub-0050740_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/M3/9p/MD5E-s188761--8f6add451c352caa3529160ce58cce95.xml/MD5E-s188761--8f6add451c352caa3529160ce58cce95.xml

Leuven_2/sub-0050740/label/catROIs_sub-0050740_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/1Z/8P/MD5E-s120024--bc428e225e7939305b0284b9ba959659.mat/MD5E-s120024--bc428e225e7939305b0284b9ba959659.mat

Leuven_2/sub-0050740/label/catROIs_sub-0050740_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/1Z/g8/MD5E-s332124--442e43df2bf13529f4f078d076db2be7.xml/MD5E-s332124--442e43df2bf13529f4f078d076db2be7.xml

Leuven_2/sub-0050740/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050740_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Leuven_2/sub-0050740/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050740_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5g/Jj/MD5E-s179330--62a80baf96067964647e587a8a3001fa.nii.gz/MD5E-s179330--62a80baf96067964647e587a8a3001fa.nii.gz

Leuven_2/sub-0050740/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050740_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Leuven_2/sub-0050740/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050740_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fF/Wv/MD5E-s201620--7960e3682ddc27aa206670daba83e764.nii.gz/MD5E-s201620--7960e3682ddc27aa206670daba83e764.nii.gz

Leuven_2/sub-0050740/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050740_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Leuven_2/sub-0050740/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050740_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4k/1X/MD5E-s256381--cd48069ee68e274462c994bd800283f9.nii.gz/MD5E-s256381--cd48069ee68e274462c994bd800283f9.nii.gz

Leuven_2/sub-0050740/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050740_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Leuven_2/sub-0050740/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050740_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZF/0j/MD5E-s286267--a259833b904f5f79eeb61a3f8774b1c0.nii.gz/MD5E-s286267--a259833b904f5f79eeb61a3f8774b1c0.nii.gz

Leuven_2/sub-0050740/mri/Tian_Subcortex_S2_7T_sub-0050740_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Leuven_2/sub-0050740/mri/Tian_Subcortex_S2_7T_sub-0050740_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G6/jv/MD5E-s26050--ef3dcfd14ecf1b52031ccd088e80c082.nii.gz/MD5E-s26050--ef3dcfd14ecf1b52031ccd088e80c082.nii.gz

Leuven_2/sub-0050740/mri/aal3_sub-0050740_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Leuven_2/sub-0050740/mri/aal3_sub-0050740_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050740/mri/anatomy3_sub-0050740_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Leuven_2/sub-0050740/mri/anatomy3_sub-0050740_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050740/mri/anon_misub-0050740_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7X/6v/MD5E-s5026719--68342560c918c67a5ff1f6d8f1700ba3.nii.gz/MD5E-s5026719--68342560c918c67a5ff1f6d8f1700ba3.nii.gz

Leuven_2/sub-0050740/mri/anon_msub-0050740_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XQ/zp/MD5E-s12171443--eb56f11c003e55c97185538eb694f2fd.nii.gz/MD5E-s12171443--eb56f11c003e55c97185538eb694f2fd.nii.gz

Leuven_2/sub-0050740/mri/cat_sub-0050740_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9w/m1/MD5E-s105534--0e7700d915199e35316924536ec85bb8.nii.gz/MD5E-s105534--0e7700d915199e35316924536ec85bb8.nii.gz

Leuven_2/sub-0050740/mri/cobra_sub-0050740_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Leuven_2/sub-0050740/mri/cobra_sub-0050740_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W2/k3/MD5E-s51317--48b50ba855d25e672e2cfc5c750dd438.nii.gz/MD5E-s51317--48b50ba855d25e672e2cfc5c750dd438.nii.gz

Leuven_2/sub-0050740/mri/hammers_sub-0050740_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Leuven_2/sub-0050740/mri/hammers_sub-0050740_T1w.nii.gz

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Leuven_2/sub-0050740/mri/ibsr_sub-0050740_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Leuven_2/sub-0050740/mri/ibsr_sub-0050740_T1w.nii.gz

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Leuven_2/sub-0050740/mri/it_sub-0050740_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/QX/4K/MD5E-s282--a0cebd486bd1009417874a47c726c9f2.mat/MD5E-s282--a0cebd486bd1009417874a47c726c9f2.mat

Leuven_2/sub-0050740/mri/it_sub-0050740_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/pW/fz/MD5E-s282--eb38d130295ab8e8b539687270bbee99.mat/MD5E-s282--eb38d130295ab8e8b539687270bbee99.mat

Leuven_2/sub-0050740/mri/iy_sub-0050740_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q7/qx/MD5E-s42900855--63190cd4b589d9c8b8d01f16e25eec3a.nii.gz/MD5E-s42900855--63190cd4b589d9c8b8d01f16e25eec3a.nii.gz

Leuven_2/sub-0050740/mri/julichbrain_sub-0050740_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Leuven_2/sub-0050740/mri/julichbrain_sub-0050740_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p0/Zv/MD5E-s213832--13201721438c102ad7cf14457f08c417.nii.gz/MD5E-s213832--13201721438c102ad7cf14457f08c417.nii.gz

Leuven_2/sub-0050740/mri/lpba40_sub-0050740_T1w.csv

@@ -0,0 +1 @@
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Leuven_2/sub-0050740/mri/lpba40_sub-0050740_T1w.nii.gz

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Leuven_2/sub-0050740/mri/m0wp1sub-0050740_T1w.nii.gz

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Leuven_2/sub-0050740/mri/m0wp2sub-0050740_T1w.nii.gz

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Leuven_2/sub-0050740/mri/m0wp3sub-0050740_T1w.nii.gz

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Leuven_2/sub-0050740/mri/mori_sub-0050740_T1w.csv

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Leuven_2/sub-0050740/mri/mori_sub-0050740_T1w.nii.gz

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Leuven_2/sub-0050740/mri/mwp1sub-0050740_T1w.nii.gz

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Leuven_2/sub-0050740/mri/mwp2sub-0050740_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/km/JF/MD5E-s2297437--ce5bb83c47b901b3a16d26590c42c779.nii.gz/MD5E-s2297437--ce5bb83c47b901b3a16d26590c42c779.nii.gz

Leuven_2/sub-0050740/mri/mwp3sub-0050740_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050740/mri/neuromorphometrics_sub-0050740_T1w.csv

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Leuven_2/sub-0050740/mri/neuromorphometrics_sub-0050740_T1w.nii.gz

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Leuven_2/sub-0050740/mri/p0sub-0050740_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050740/mri/p1sub-0050740_T1w.nii.gz

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Leuven_2/sub-0050740/mri/p2sub-0050740_T1w.nii.gz

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Leuven_2/sub-0050740/mri/p3sub-0050740_T1w.nii.gz

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Leuven_2/sub-0050740/mri/rp1sub-0050740_T1w_affine.nii.gz

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Leuven_2/sub-0050740/mri/rp2sub-0050740_T1w_affine.nii.gz

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Leuven_2/sub-0050740/mri/rp3sub-0050740_T1w_affine.nii.gz

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Leuven_2/sub-0050740/mri/t_sub-0050740_T1w_affine_reorient.mat

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Leuven_2/sub-0050740/mri/t_sub-0050740_T1w_rigid_reorient.mat

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Leuven_2/sub-0050740/mri/thalamus_sub-0050740_T1w.csv

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Leuven_2/sub-0050740/mri/thalamus_sub-0050740_T1w.nii.gz

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Leuven_2/sub-0050740/mri/wj_sub-0050740_T1w.nii.gz

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Leuven_2/sub-0050740/mri/wmisub-0050740_T1w.nii.gz

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Leuven_2/sub-0050740/mri/wmsub-0050740_T1w.nii.gz

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Leuven_2/sub-0050740/mri/wp0sub-0050740_T1w.nii.gz

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Leuven_2/sub-0050740/mri/wp1sub-0050740_T1w.nii.gz

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