[DATALAD RUNCMD] Compute NYU/sub-0051087

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/NYU/sub-0051087/anat/sub-0051087_T1w.nii.gz"
 ],
 "outputs": [
  "NYU/sub-0051087"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU/sub-0051087/label/catROI_sub-0051087_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/pF/jx/MD5E-s58209--7d7e1cd2c4f422af8bdd18babec337f9.mat/MD5E-s58209--7d7e1cd2c4f422af8bdd18babec337f9.mat

NYU/sub-0051087/label/catROI_sub-0051087_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/zg/xQ/MD5E-s188697--d1077cfd6f92cfc0eb6f1d283cdf99cd.xml/MD5E-s188697--d1077cfd6f92cfc0eb6f1d283cdf99cd.xml

NYU/sub-0051087/label/catROIs_sub-0051087_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/qq/Xw/MD5E-s120273--7b6fab001ab1e45983ad82feffa848d0.mat/MD5E-s120273--7b6fab001ab1e45983ad82feffa848d0.mat

NYU/sub-0051087/label/catROIs_sub-0051087_T1w.xml

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+../../../.git/annex/objects/zG/48/MD5E-s332171--d949507e953f360d80ac7a7e328cbadf.xml/MD5E-s332171--d949507e953f360d80ac7a7e328cbadf.xml

NYU/sub-0051087/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051087_T1w.csv

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+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU/sub-0051087/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051087_T1w.nii.gz

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+../../../.git/annex/objects/pV/GK/MD5E-s153473--3a8edd92401c85f0e563d2bde55c4af9.nii.gz/MD5E-s153473--3a8edd92401c85f0e563d2bde55c4af9.nii.gz

NYU/sub-0051087/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051087_T1w.csv

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NYU/sub-0051087/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051087_T1w.nii.gz

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+../../../.git/annex/objects/QG/kW/MD5E-s171572--ee42db73685988acb227bb9ef73c8431.nii.gz/MD5E-s171572--ee42db73685988acb227bb9ef73c8431.nii.gz

NYU/sub-0051087/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051087_T1w.csv

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NYU/sub-0051087/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051087_T1w.csv

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NYU/sub-0051087/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/Tian_Subcortex_S2_7T_sub-0051087_T1w.csv

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NYU/sub-0051087/mri/Tian_Subcortex_S2_7T_sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/aal3_sub-0051087_T1w.csv

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NYU/sub-0051087/mri/aal3_sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/anatomy3_sub-0051087_T1w.csv

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NYU/sub-0051087/mri/anatomy3_sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/anon_misub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/anon_msub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/cat_sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/cobra_sub-0051087_T1w.csv

@@ -0,0 +1 @@
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NYU/sub-0051087/mri/cobra_sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/hammers_sub-0051087_T1w.csv

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+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU/sub-0051087/mri/hammers_sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/ibsr_sub-0051087_T1w.csv

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NYU/sub-0051087/mri/ibsr_sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/it_sub-0051087_T1w_affine_reorient.mat

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NYU/sub-0051087/mri/it_sub-0051087_T1w_rigid_reorient.mat

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NYU/sub-0051087/mri/iy_sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/julichbrain_sub-0051087_T1w.csv

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NYU/sub-0051087/mri/julichbrain_sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/lpba40_sub-0051087_T1w.csv

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NYU/sub-0051087/mri/lpba40_sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/m0wp1sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/m0wp2sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/m0wp3sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/mori_sub-0051087_T1w.csv

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NYU/sub-0051087/mri/mori_sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/mwp1sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/mwp2sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/mwp3sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/neuromorphometrics_sub-0051087_T1w.csv

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NYU/sub-0051087/mri/neuromorphometrics_sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/p0sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/p1sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/p2sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/p3sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/rp1sub-0051087_T1w_affine.nii.gz

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NYU/sub-0051087/mri/rp2sub-0051087_T1w_affine.nii.gz

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NYU/sub-0051087/mri/rp3sub-0051087_T1w_affine.nii.gz

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NYU/sub-0051087/mri/t_sub-0051087_T1w_affine_reorient.mat

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NYU/sub-0051087/mri/t_sub-0051087_T1w_rigid_reorient.mat

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NYU/sub-0051087/mri/thalamus_sub-0051087_T1w.csv

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NYU/sub-0051087/mri/thalamus_sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/wj_sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/wmisub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/wmsub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/wp0sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/wp1sub-0051087_T1w.nii.gz

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NYU/sub-0051087/mri/wp2sub-0051087_T1w.nii.gz

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