[DATALAD RUNCMD] Compute CMU_a/sub-0050663

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/CMU_a/sub-0050663/anat/sub-0050663_T1w.nii.gz"
 ],
 "outputs": [
  "CMU_a/sub-0050663"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

CMU_a/sub-0050663/label/catROI_sub-0050663_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/FF/kx/MD5E-s58035--c6f7565f06f93bf4d61a2b9df4a13858.mat/MD5E-s58035--c6f7565f06f93bf4d61a2b9df4a13858.mat

CMU_a/sub-0050663/label/catROI_sub-0050663_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/W7/pZ/MD5E-s188559--c74914a60075369d0050811e5fec5440.xml/MD5E-s188559--c74914a60075369d0050811e5fec5440.xml

CMU_a/sub-0050663/label/catROIs_sub-0050663_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/kW/Pq/MD5E-s120106--bf8643190164a04e1ed6ae1f03d51b7f.mat/MD5E-s120106--bf8643190164a04e1ed6ae1f03d51b7f.mat

CMU_a/sub-0050663/label/catROIs_sub-0050663_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z3/02/MD5E-s332068--d0522121fe862af86277cd14c4eca1ff.xml/MD5E-s332068--d0522121fe862af86277cd14c4eca1ff.xml

CMU_a/sub-0050663/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050663_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

CMU_a/sub-0050663/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vm/Kx/MD5E-s179884--aa1f98b6acf1bcb60b0b1135c1569706.nii.gz/MD5E-s179884--aa1f98b6acf1bcb60b0b1135c1569706.nii.gz

CMU_a/sub-0050663/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050663_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

CMU_a/sub-0050663/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mp/6Z/MD5E-s201647--a12f6f329c493a52cab17f8d03f50eec.nii.gz/MD5E-s201647--a12f6f329c493a52cab17f8d03f50eec.nii.gz

CMU_a/sub-0050663/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050663_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

CMU_a/sub-0050663/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gF/56/MD5E-s271846--9cab1dd78039ba9330911e0c5a1c959d.nii.gz/MD5E-s271846--9cab1dd78039ba9330911e0c5a1c959d.nii.gz

CMU_a/sub-0050663/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050663_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

CMU_a/sub-0050663/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kz/qZ/MD5E-s302808--6fff4c69fbc32a50cdfa2c4930de6b68.nii.gz/MD5E-s302808--6fff4c69fbc32a50cdfa2c4930de6b68.nii.gz

CMU_a/sub-0050663/mri/Tian_Subcortex_S2_7T_sub-0050663_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

CMU_a/sub-0050663/mri/Tian_Subcortex_S2_7T_sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zq/wq/MD5E-s25463--9905f95a991408bbce6a620fdfd35ce7.nii.gz/MD5E-s25463--9905f95a991408bbce6a620fdfd35ce7.nii.gz

CMU_a/sub-0050663/mri/aal3_sub-0050663_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

CMU_a/sub-0050663/mri/aal3_sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/71/mm/MD5E-s203476--bf2ec95864dbf9527a222a6836a810d5.nii.gz/MD5E-s203476--bf2ec95864dbf9527a222a6836a810d5.nii.gz

CMU_a/sub-0050663/mri/anatomy3_sub-0050663_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

CMU_a/sub-0050663/mri/anatomy3_sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pg/fW/MD5E-s146921--faf9aa099c360f1f99de0fe1a73e08f8.nii.gz/MD5E-s146921--faf9aa099c360f1f99de0fe1a73e08f8.nii.gz

CMU_a/sub-0050663/mri/anon_misub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qP/J0/MD5E-s9482629--3bbd2b5611eac6248b5a0612564e61c2.nii.gz/MD5E-s9482629--3bbd2b5611eac6248b5a0612564e61c2.nii.gz

CMU_a/sub-0050663/mri/anon_msub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FX/q1/MD5E-s9793446--1dd4f4a0f3b965c84ec4042e1cebdfca.nii.gz/MD5E-s9793446--1dd4f4a0f3b965c84ec4042e1cebdfca.nii.gz

CMU_a/sub-0050663/mri/cat_sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/40/qQ/MD5E-s108376--f84caad41a09ae8d3dd80ff2b15d226b.nii.gz/MD5E-s108376--f84caad41a09ae8d3dd80ff2b15d226b.nii.gz

CMU_a/sub-0050663/mri/cobra_sub-0050663_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

CMU_a/sub-0050663/mri/cobra_sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/28/qM/MD5E-s51012--11ebbd1ee123dc4611779e855fb15f3c.nii.gz/MD5E-s51012--11ebbd1ee123dc4611779e855fb15f3c.nii.gz

CMU_a/sub-0050663/mri/hammers_sub-0050663_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

CMU_a/sub-0050663/mri/hammers_sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9J/g9/MD5E-s156952--014cb4d80d40ba83e3bda7702048956f.nii.gz/MD5E-s156952--014cb4d80d40ba83e3bda7702048956f.nii.gz

CMU_a/sub-0050663/mri/ibsr_sub-0050663_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

CMU_a/sub-0050663/mri/ibsr_sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vw/1V/MD5E-s167498--32fb13a837c0268dbc05e7c56fa1d348.nii.gz/MD5E-s167498--32fb13a837c0268dbc05e7c56fa1d348.nii.gz

CMU_a/sub-0050663/mri/it_sub-0050663_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/fv/6K/MD5E-s283--caf328ec228979788a198bcc2fb6bbe8.mat/MD5E-s283--caf328ec228979788a198bcc2fb6bbe8.mat

CMU_a/sub-0050663/mri/it_sub-0050663_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/92/P4/MD5E-s283--f8e58cb2e25eb702004b774e4d47d5c6.mat/MD5E-s283--f8e58cb2e25eb702004b774e4d47d5c6.mat

CMU_a/sub-0050663/mri/iy_sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5G/65/MD5E-s49812760--c5529e217e9f0cb3885546d60ce07756.nii.gz/MD5E-s49812760--c5529e217e9f0cb3885546d60ce07756.nii.gz

CMU_a/sub-0050663/mri/julichbrain_sub-0050663_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

CMU_a/sub-0050663/mri/julichbrain_sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/48/Fw/MD5E-s215904--3eba0d6238eac72d4528c30968d6d6cc.nii.gz/MD5E-s215904--3eba0d6238eac72d4528c30968d6d6cc.nii.gz

CMU_a/sub-0050663/mri/lpba40_sub-0050663_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

CMU_a/sub-0050663/mri/lpba40_sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/X8/MD5E-s155235--eef70d5cd8e7e36ad0a94333579fcac6.nii.gz/MD5E-s155235--eef70d5cd8e7e36ad0a94333579fcac6.nii.gz

CMU_a/sub-0050663/mri/m0wp1sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xp/JF/MD5E-s2570325--1c33ac59a0740dfa9ba520351ed8b414.nii.gz/MD5E-s2570325--1c33ac59a0740dfa9ba520351ed8b414.nii.gz

CMU_a/sub-0050663/mri/m0wp2sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JW/kq/MD5E-s2328715--f2a2ac1f4d5de2753078ca1d55d5c8d7.nii.gz/MD5E-s2328715--f2a2ac1f4d5de2753078ca1d55d5c8d7.nii.gz

CMU_a/sub-0050663/mri/m0wp3sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k9/m7/MD5E-s2496694--a0eacd37469d212e33bcf09812dca177.nii.gz/MD5E-s2496694--a0eacd37469d212e33bcf09812dca177.nii.gz

CMU_a/sub-0050663/mri/mori_sub-0050663_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

CMU_a/sub-0050663/mri/mori_sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/70/z7/MD5E-s186190--6b060c3e76e3a9bc9bc344f7e1b48e11.nii.gz/MD5E-s186190--6b060c3e76e3a9bc9bc344f7e1b48e11.nii.gz

CMU_a/sub-0050663/mri/mwp1sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/88/2G/MD5E-s2570312--4c1d96a33687f248083af29df125a113.nii.gz/MD5E-s2570312--4c1d96a33687f248083af29df125a113.nii.gz

CMU_a/sub-0050663/mri/mwp2sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zj/M0/MD5E-s2321416--46467594787c4428dc8af48c8b3dbfcf.nii.gz/MD5E-s2321416--46467594787c4428dc8af48c8b3dbfcf.nii.gz

CMU_a/sub-0050663/mri/mwp3sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/69/x2/MD5E-s2493343--cdae76650b65bd63ef0a5f088e0225c3.nii.gz/MD5E-s2493343--cdae76650b65bd63ef0a5f088e0225c3.nii.gz

CMU_a/sub-0050663/mri/neuromorphometrics_sub-0050663_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

CMU_a/sub-0050663/mri/neuromorphometrics_sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9w/Fq/MD5E-s216713--7030ceb9e8e7933c2182c8ccbe5e1390.nii.gz/MD5E-s216713--7030ceb9e8e7933c2182c8ccbe5e1390.nii.gz

CMU_a/sub-0050663/mri/p0sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kw/7x/MD5E-s700045--b53f459ea4126e10544c90079caa9817.nii.gz/MD5E-s700045--b53f459ea4126e10544c90079caa9817.nii.gz

CMU_a/sub-0050663/mri/p1sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4m/jP/MD5E-s744822--f0185f543ee03a5758c02358265536e8.nii.gz/MD5E-s744822--f0185f543ee03a5758c02358265536e8.nii.gz

CMU_a/sub-0050663/mri/p2sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fq/Q4/MD5E-s507674--ed181d535183f6d513036665bc7de35e.nii.gz/MD5E-s507674--ed181d535183f6d513036665bc7de35e.nii.gz

CMU_a/sub-0050663/mri/p3sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MJ/F6/MD5E-s404120--d10614cdf86e8c552fbe2523fc794e3f.nii.gz/MD5E-s404120--d10614cdf86e8c552fbe2523fc794e3f.nii.gz

CMU_a/sub-0050663/mri/rp1sub-0050663_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PJ/J9/MD5E-s446561--37ebcbdbe18d01afa54a68b9f6d783ca.nii.gz/MD5E-s446561--37ebcbdbe18d01afa54a68b9f6d783ca.nii.gz

CMU_a/sub-0050663/mri/rp2sub-0050663_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z6/zW/MD5E-s315447--2e9b76b594cd545ba14eab3f54ca71f5.nii.gz/MD5E-s315447--2e9b76b594cd545ba14eab3f54ca71f5.nii.gz

CMU_a/sub-0050663/mri/rp3sub-0050663_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x8/23/MD5E-s271551--870068e471d205628ccf8f85c60826b2.nii.gz/MD5E-s271551--870068e471d205628ccf8f85c60826b2.nii.gz

CMU_a/sub-0050663/mri/t_sub-0050663_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vp/vg/MD5E-s284--acffc1dec1e56519afd2188049714e9a.mat/MD5E-s284--acffc1dec1e56519afd2188049714e9a.mat

CMU_a/sub-0050663/mri/t_sub-0050663_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/P1/Qx/MD5E-s284--8fa43189c9d2733a960ab1fb0810c7a2.mat/MD5E-s284--8fa43189c9d2733a960ab1fb0810c7a2.mat

CMU_a/sub-0050663/mri/thalamus_sub-0050663_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

CMU_a/sub-0050663/mri/thalamus_sub-0050663_T1w.nii.gz

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CMU_a/sub-0050663/mri/wj_sub-0050663_T1w.nii.gz

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CMU_a/sub-0050663/mri/wmisub-0050663_T1w.nii.gz

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CMU_a/sub-0050663/mri/wmsub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050663/mri/wp0sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050663/mri/wp1sub-0050663_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050663/mri/wp2sub-0050663_T1w.nii.gz

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CMU_a/sub-0050663/mri/wp3sub-0050663_T1w.nii.gz

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