[DATALAD RUNCMD] Compute UM_1/sub-0050340

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050340/anat/sub-0050340_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050340"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050340/label/catROI_sub-0050340_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/W4/MV/MD5E-s61370--fabbc512c56b06dfee8f0f692fdbcf61.mat/MD5E-s61370--fabbc512c56b06dfee8f0f692fdbcf61.mat

UM_1/sub-0050340/label/catROI_sub-0050340_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/0p/MD5E-s189205--6a6be9f73d542c0580172ada46eb8d71.xml/MD5E-s189205--6a6be9f73d542c0580172ada46eb8d71.xml

UM_1/sub-0050340/label/catROIs_sub-0050340_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/g9/JJ/MD5E-s120133--fbd62ccc3d8be976ab4dcaccc9a128c7.mat/MD5E-s120133--fbd62ccc3d8be976ab4dcaccc9a128c7.mat

UM_1/sub-0050340/label/catROIs_sub-0050340_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qz/xv/MD5E-s332102--147a4deabf691a9ce0e9d37df99ac7be.xml/MD5E-s332102--147a4deabf691a9ce0e9d37df99ac7be.xml

UM_1/sub-0050340/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050340_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050340/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050340_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jz/v4/MD5E-s123914--b6212f148c72bbdb6fa4a664f9c23e56.nii.gz/MD5E-s123914--b6212f148c72bbdb6fa4a664f9c23e56.nii.gz

UM_1/sub-0050340/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050340_T1w.csv

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UM_1/sub-0050340/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050340_T1w.nii.gz

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+../../../.git/annex/objects/PP/0K/MD5E-s139967--3fb6112bf745c217ea3fc1dce0f17312.nii.gz/MD5E-s139967--3fb6112bf745c217ea3fc1dce0f17312.nii.gz

UM_1/sub-0050340/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050340_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050340/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050340_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050340/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050340_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gg/Fk/MD5E-s195140--2818d54c0303b4ee9e29c4411a409150.nii.gz/MD5E-s195140--2818d54c0303b4ee9e29c4411a409150.nii.gz

UM_1/sub-0050340/mri/Tian_Subcortex_S2_7T_sub-0050340_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050340/mri/Tian_Subcortex_S2_7T_sub-0050340_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050340/mri/aal3_sub-0050340_T1w.csv

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UM_1/sub-0050340/mri/aal3_sub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/anatomy3_sub-0050340_T1w.csv

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UM_1/sub-0050340/mri/anatomy3_sub-0050340_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050340/mri/anon_misub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/anon_msub-0050340_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z2/WM/MD5E-s7534771--a14ff5061b8054ece29db7b09a0ce5f3.nii.gz/MD5E-s7534771--a14ff5061b8054ece29db7b09a0ce5f3.nii.gz

UM_1/sub-0050340/mri/cat_sub-0050340_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050340/mri/cobra_sub-0050340_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050340/mri/cobra_sub-0050340_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050340/mri/hammers_sub-0050340_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050340/mri/hammers_sub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/ibsr_sub-0050340_T1w.csv

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UM_1/sub-0050340/mri/ibsr_sub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/it_sub-0050340_T1w_affine_reorient.mat

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UM_1/sub-0050340/mri/it_sub-0050340_T1w_rigid_reorient.mat

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UM_1/sub-0050340/mri/iy_sub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/julichbrain_sub-0050340_T1w.csv

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UM_1/sub-0050340/mri/julichbrain_sub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/lpba40_sub-0050340_T1w.csv

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UM_1/sub-0050340/mri/lpba40_sub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/m0wp1sub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/m0wp2sub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/m0wp3sub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/mori_sub-0050340_T1w.csv

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UM_1/sub-0050340/mri/mori_sub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/mwp1sub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/mwp2sub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/mwp3sub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/neuromorphometrics_sub-0050340_T1w.csv

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UM_1/sub-0050340/mri/neuromorphometrics_sub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/p0sub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/p1sub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/p2sub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/p3sub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/rp1sub-0050340_T1w_affine.nii.gz

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UM_1/sub-0050340/mri/rp2sub-0050340_T1w_affine.nii.gz

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UM_1/sub-0050340/mri/rp3sub-0050340_T1w_affine.nii.gz

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UM_1/sub-0050340/mri/t_sub-0050340_T1w_affine_reorient.mat

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UM_1/sub-0050340/mri/t_sub-0050340_T1w_rigid_reorient.mat

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UM_1/sub-0050340/mri/thalamus_sub-0050340_T1w.csv

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UM_1/sub-0050340/mri/thalamus_sub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/wj_sub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/wmisub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/wp0sub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/wp1sub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/wp2sub-0050340_T1w.nii.gz

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UM_1/sub-0050340/mri/wp3sub-0050340_T1w.nii.gz

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