[DATALAD RUNCMD] Compute UM_1/sub-0050354

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050354/anat/sub-0050354_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050354"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050354/label/catROI_sub-0050354_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/mg/Z6/MD5E-s61312--cb2e0fa25cd0ca2b1c595e05c0544d7f.mat/MD5E-s61312--cb2e0fa25cd0ca2b1c595e05c0544d7f.mat

UM_1/sub-0050354/label/catROI_sub-0050354_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/j9/G7/MD5E-s188842--4f1bff5c373d7d25d4bfc7ae064b8687.xml/MD5E-s188842--4f1bff5c373d7d25d4bfc7ae064b8687.xml

UM_1/sub-0050354/label/catROIs_sub-0050354_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wp/6z/MD5E-s120090--942f0f13c80a77906b2ca3ac7d87bd3d.mat/MD5E-s120090--942f0f13c80a77906b2ca3ac7d87bd3d.mat

UM_1/sub-0050354/label/catROIs_sub-0050354_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/2w/XZ/MD5E-s332069--2ba266c233d971c5c77b692643faf7e6.xml/MD5E-s332069--2ba266c233d971c5c77b692643faf7e6.xml

UM_1/sub-0050354/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050354_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050354/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050354_T1w.nii.gz

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+../../../.git/annex/objects/4V/p4/MD5E-s131912--a5a41583664664b97944d8185b34bcbf.nii.gz/MD5E-s131912--a5a41583664664b97944d8185b34bcbf.nii.gz

UM_1/sub-0050354/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050354_T1w.csv

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UM_1/sub-0050354/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050354_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VX/FM/MD5E-s147472--1343e05d5a50e95409bae9270ce3c626.nii.gz/MD5E-s147472--1343e05d5a50e95409bae9270ce3c626.nii.gz

UM_1/sub-0050354/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050354_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050354/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050354_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050354/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050354_T1w.nii.gz

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+../../../.git/annex/objects/m7/vG/MD5E-s207228--76dabe0ea5fc1fecef817d48c8d07890.nii.gz/MD5E-s207228--76dabe0ea5fc1fecef817d48c8d07890.nii.gz

UM_1/sub-0050354/mri/Tian_Subcortex_S2_7T_sub-0050354_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050354/mri/Tian_Subcortex_S2_7T_sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/aal3_sub-0050354_T1w.csv

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UM_1/sub-0050354/mri/aal3_sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/anatomy3_sub-0050354_T1w.csv

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UM_1/sub-0050354/mri/anatomy3_sub-0050354_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050354/mri/anon_misub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/anon_msub-0050354_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050354/mri/cat_sub-0050354_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050354/mri/cobra_sub-0050354_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050354/mri/cobra_sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/hammers_sub-0050354_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050354/mri/hammers_sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/ibsr_sub-0050354_T1w.csv

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UM_1/sub-0050354/mri/ibsr_sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/it_sub-0050354_T1w_affine_reorient.mat

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UM_1/sub-0050354/mri/it_sub-0050354_T1w_rigid_reorient.mat

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UM_1/sub-0050354/mri/iy_sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/julichbrain_sub-0050354_T1w.csv

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UM_1/sub-0050354/mri/julichbrain_sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/lpba40_sub-0050354_T1w.csv

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UM_1/sub-0050354/mri/lpba40_sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/m0wp1sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/m0wp2sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/m0wp3sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/mori_sub-0050354_T1w.csv

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UM_1/sub-0050354/mri/mori_sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/mwp1sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/mwp2sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/mwp3sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/neuromorphometrics_sub-0050354_T1w.csv

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UM_1/sub-0050354/mri/neuromorphometrics_sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/p0sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/p1sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/p2sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/p3sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/rp1sub-0050354_T1w_affine.nii.gz

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UM_1/sub-0050354/mri/rp2sub-0050354_T1w_affine.nii.gz

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UM_1/sub-0050354/mri/rp3sub-0050354_T1w_affine.nii.gz

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UM_1/sub-0050354/mri/t_sub-0050354_T1w_affine_reorient.mat

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UM_1/sub-0050354/mri/t_sub-0050354_T1w_rigid_reorient.mat

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UM_1/sub-0050354/mri/thalamus_sub-0050354_T1w.csv

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UM_1/sub-0050354/mri/thalamus_sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/wj_sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/wmisub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/wp0sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/wp1sub-0050354_T1w.nii.gz

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UM_1/sub-0050354/mri/wp2sub-0050354_T1w.nii.gz

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