[DATALAD RUNCMD] Compute UM_2/sub-0050413

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_2/sub-0050413/anat/sub-0050413_T1w.nii.gz"
 ],
 "outputs": [
  "UM_2/sub-0050413"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_2/sub-0050413/label/catROI_sub-0050413_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/KQ/XW/MD5E-s58240--98280b1ce14c0d435ee209734dd8c832.mat/MD5E-s58240--98280b1ce14c0d435ee209734dd8c832.mat

UM_2/sub-0050413/label/catROI_sub-0050413_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/WK/Z1/MD5E-s189018--9df10292b76235f29434d166aa161809.xml/MD5E-s189018--9df10292b76235f29434d166aa161809.xml

UM_2/sub-0050413/label/catROIs_sub-0050413_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fj/vf/MD5E-s120053--70877b2ffa764b8218530675795c5e5a.mat/MD5E-s120053--70877b2ffa764b8218530675795c5e5a.mat

UM_2/sub-0050413/label/catROIs_sub-0050413_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/7z/qK/MD5E-s332153--93615eb3f58149a51ce2b038e839372e.xml/MD5E-s332153--93615eb3f58149a51ce2b038e839372e.xml

UM_2/sub-0050413/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050413_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_2/sub-0050413/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050413_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W0/j6/MD5E-s134778--aabd3a840491141b3b5662a32506957e.nii.gz/MD5E-s134778--aabd3a840491141b3b5662a32506957e.nii.gz

UM_2/sub-0050413/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050413_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_2/sub-0050413/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050413_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V2/vm/MD5E-s150679--c4fc82a9c4f502d13d21a24d467d7059.nii.gz/MD5E-s150679--c4fc82a9c4f502d13d21a24d467d7059.nii.gz

UM_2/sub-0050413/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050413_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_2/sub-0050413/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050413_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qw/mJ/MD5E-s211999--e50d43b4e92ba58f377b03472bfc1cc9.nii.gz/MD5E-s211999--e50d43b4e92ba58f377b03472bfc1cc9.nii.gz

UM_2/sub-0050413/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050413_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_2/sub-0050413/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050413_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pq/6x/MD5E-s233323--1e13e48934ec439c794c77707323e139.nii.gz/MD5E-s233323--1e13e48934ec439c794c77707323e139.nii.gz

UM_2/sub-0050413/mri/Tian_Subcortex_S2_7T_sub-0050413_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_2/sub-0050413/mri/Tian_Subcortex_S2_7T_sub-0050413_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gp/1Q/MD5E-s17959--25788d17fe4e62c65ae7abced173d743.nii.gz/MD5E-s17959--25788d17fe4e62c65ae7abced173d743.nii.gz

UM_2/sub-0050413/mri/aal3_sub-0050413_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

UM_2/sub-0050413/mri/aal3_sub-0050413_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050413/mri/anatomy3_sub-0050413_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

UM_2/sub-0050413/mri/anatomy3_sub-0050413_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W2/vV/MD5E-s105374--8ee93e913b0d6f0a50ef5ad15310bbaa.nii.gz/MD5E-s105374--8ee93e913b0d6f0a50ef5ad15310bbaa.nii.gz

UM_2/sub-0050413/mri/anon_misub-0050413_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/42/VK/MD5E-s4031520--102f0e1fe76dfd6850852aa348604ce4.nii.gz/MD5E-s4031520--102f0e1fe76dfd6850852aa348604ce4.nii.gz

UM_2/sub-0050413/mri/anon_msub-0050413_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5Z/w6/MD5E-s5793559--c9692142790e568ddb9c304adc969007.nii.gz/MD5E-s5793559--c9692142790e568ddb9c304adc969007.nii.gz

UM_2/sub-0050413/mri/cat_sub-0050413_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KX/g8/MD5E-s81019--0f98915758b05f5f04edcef3cb15c72f.nii.gz/MD5E-s81019--0f98915758b05f5f04edcef3cb15c72f.nii.gz

UM_2/sub-0050413/mri/cobra_sub-0050413_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_2/sub-0050413/mri/cobra_sub-0050413_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2p/GX/MD5E-s37251--265dd76920a3c028845ee9c415d5a688.nii.gz/MD5E-s37251--265dd76920a3c028845ee9c415d5a688.nii.gz

UM_2/sub-0050413/mri/hammers_sub-0050413_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_2/sub-0050413/mri/hammers_sub-0050413_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kv/q1/MD5E-s118165--f6bb9cdad8881fedda7049d60d2bc439.nii.gz/MD5E-s118165--f6bb9cdad8881fedda7049d60d2bc439.nii.gz

UM_2/sub-0050413/mri/ibsr_sub-0050413_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

UM_2/sub-0050413/mri/ibsr_sub-0050413_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vW/GK/MD5E-s131358--280dbfdcdf6a91f359de9ed2b7002794.nii.gz/MD5E-s131358--280dbfdcdf6a91f359de9ed2b7002794.nii.gz

UM_2/sub-0050413/mri/it_sub-0050413_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/vk/Kp/MD5E-s284--de258209601e42ac03b5c826a15def46.mat/MD5E-s284--de258209601e42ac03b5c826a15def46.mat

UM_2/sub-0050413/mri/it_sub-0050413_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/fP/p8/MD5E-s283--c95de7dfc2a3e915b5e1180f03e4adc0.mat/MD5E-s283--c95de7dfc2a3e915b5e1180f03e4adc0.mat

UM_2/sub-0050413/mri/iy_sub-0050413_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X5/zg/MD5E-s34054982--e6fe6c5ad80510fc3db6d0d11b42a773.nii.gz/MD5E-s34054982--e6fe6c5ad80510fc3db6d0d11b42a773.nii.gz

UM_2/sub-0050413/mri/julichbrain_sub-0050413_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UM_2/sub-0050413/mri/julichbrain_sub-0050413_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mv/jf/MD5E-s159962--c4ad9219dc720cc95f18fbb408b4a23a.nii.gz/MD5E-s159962--c4ad9219dc720cc95f18fbb408b4a23a.nii.gz

UM_2/sub-0050413/mri/lpba40_sub-0050413_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

UM_2/sub-0050413/mri/lpba40_sub-0050413_T1w.nii.gz

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UM_2/sub-0050413/mri/m0wp1sub-0050413_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pq/mV/MD5E-s2591546--c9432fd3749ae7be81dac0f32fd77e58.nii.gz/MD5E-s2591546--c9432fd3749ae7be81dac0f32fd77e58.nii.gz

UM_2/sub-0050413/mri/m0wp2sub-0050413_T1w.nii.gz

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UM_2/sub-0050413/mri/m0wp3sub-0050413_T1w.nii.gz

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UM_2/sub-0050413/mri/mori_sub-0050413_T1w.csv

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UM_2/sub-0050413/mri/mori_sub-0050413_T1w.nii.gz

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UM_2/sub-0050413/mri/mwp1sub-0050413_T1w.nii.gz

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UM_2/sub-0050413/mri/mwp2sub-0050413_T1w.nii.gz

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UM_2/sub-0050413/mri/mwp3sub-0050413_T1w.nii.gz

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UM_2/sub-0050413/mri/neuromorphometrics_sub-0050413_T1w.csv

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UM_2/sub-0050413/mri/neuromorphometrics_sub-0050413_T1w.nii.gz

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UM_2/sub-0050413/mri/p0sub-0050413_T1w.nii.gz

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UM_2/sub-0050413/mri/p1sub-0050413_T1w.nii.gz

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UM_2/sub-0050413/mri/p2sub-0050413_T1w.nii.gz

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UM_2/sub-0050413/mri/p3sub-0050413_T1w.nii.gz

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UM_2/sub-0050413/mri/rp1sub-0050413_T1w_affine.nii.gz

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UM_2/sub-0050413/mri/rp2sub-0050413_T1w_affine.nii.gz

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UM_2/sub-0050413/mri/rp3sub-0050413_T1w_affine.nii.gz

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UM_2/sub-0050413/mri/t_sub-0050413_T1w_affine_reorient.mat

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UM_2/sub-0050413/mri/t_sub-0050413_T1w_rigid_reorient.mat

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UM_2/sub-0050413/mri/thalamus_sub-0050413_T1w.csv

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UM_2/sub-0050413/mri/thalamus_sub-0050413_T1w.nii.gz

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UM_2/sub-0050413/mri/wj_sub-0050413_T1w.nii.gz

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UM_2/sub-0050413/mri/wmisub-0050413_T1w.nii.gz

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UM_2/sub-0050413/mri/wmsub-0050413_T1w.nii.gz

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UM_2/sub-0050413/mri/wp0sub-0050413_T1w.nii.gz

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UM_2/sub-0050413/mri/wp1sub-0050413_T1w.nii.gz

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UM_2/sub-0050413/mri/wp2sub-0050413_T1w.nii.gz

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