[DATALAD RUNCMD] Compute NYU/sub-0050956

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/NYU/sub-0050956/anat/sub-0050956_T1w.nii.gz"
 ],
 "outputs": [
  "NYU/sub-0050956"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU/sub-0050956/label/catROI_sub-0050956_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q7/0w/MD5E-s57667--5239023f78f4add9f91cb2972fe2a5f2.mat/MD5E-s57667--5239023f78f4add9f91cb2972fe2a5f2.mat

NYU/sub-0050956/label/catROI_sub-0050956_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/v3/pJ/MD5E-s189118--1db3c33318cd783ca87ee14a2c34060b.xml/MD5E-s189118--1db3c33318cd783ca87ee14a2c34060b.xml

NYU/sub-0050956/label/catROIs_sub-0050956_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/3w/81/MD5E-s120296--b795b176f965d2be3e9a07e7f533f917.mat/MD5E-s120296--b795b176f965d2be3e9a07e7f533f917.mat

NYU/sub-0050956/label/catROIs_sub-0050956_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/5K/fw/MD5E-s332160--0d2af76f4acaec2efd3eaabd4b4c0578.xml/MD5E-s332160--0d2af76f4acaec2efd3eaabd4b4c0578.xml

NYU/sub-0050956/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050956_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU/sub-0050956/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050956_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0p/jz/MD5E-s130991--c4e89aa8bf3a90068144a1b75acd81dc.nii.gz/MD5E-s130991--c4e89aa8bf3a90068144a1b75acd81dc.nii.gz

NYU/sub-0050956/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050956_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU/sub-0050956/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050956_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M8/Z3/MD5E-s148747--6c1c1631b67127d207319d029d8aa72c.nii.gz/MD5E-s148747--6c1c1631b67127d207319d029d8aa72c.nii.gz

NYU/sub-0050956/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050956_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU/sub-0050956/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050956_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MV/v6/MD5E-s197931--100eba6e2c4bebb425f416fbe18cf5e9.nii.gz/MD5E-s197931--100eba6e2c4bebb425f416fbe18cf5e9.nii.gz

NYU/sub-0050956/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050956_T1w.csv

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+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU/sub-0050956/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050956_T1w.nii.gz

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+../../../.git/annex/objects/f6/45/MD5E-s220852--b3570a05f75e7fa543adedfe335c0089.nii.gz/MD5E-s220852--b3570a05f75e7fa543adedfe335c0089.nii.gz

NYU/sub-0050956/mri/Tian_Subcortex_S2_7T_sub-0050956_T1w.csv

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+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU/sub-0050956/mri/Tian_Subcortex_S2_7T_sub-0050956_T1w.nii.gz

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+../../../.git/annex/objects/vf/Gp/MD5E-s19114--cc98774dd2d412039f3fcd20e987c403.nii.gz/MD5E-s19114--cc98774dd2d412039f3fcd20e987c403.nii.gz

NYU/sub-0050956/mri/aal3_sub-0050956_T1w.csv

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NYU/sub-0050956/mri/aal3_sub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/anatomy3_sub-0050956_T1w.csv

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NYU/sub-0050956/mri/anatomy3_sub-0050956_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jv/3g/MD5E-s105109--dd2bdeab3b7f74e5562325d64d4aaf18.nii.gz/MD5E-s105109--dd2bdeab3b7f74e5562325d64d4aaf18.nii.gz

NYU/sub-0050956/mri/anon_misub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/anon_msub-0050956_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zm/KV/MD5E-s7593929--8b830b3ed7dbdb2338ee4bbdea4fd376.nii.gz/MD5E-s7593929--8b830b3ed7dbdb2338ee4bbdea4fd376.nii.gz

NYU/sub-0050956/mri/cat_sub-0050956_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/v1/5m/MD5E-s76673--d379355236128c024b9f6a1a6ca1ea9d.nii.gz/MD5E-s76673--d379355236128c024b9f6a1a6ca1ea9d.nii.gz

NYU/sub-0050956/mri/cobra_sub-0050956_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU/sub-0050956/mri/cobra_sub-0050956_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qj/QF/MD5E-s38139--cbfdd28f5f866900cedead4fc11e59af.nii.gz/MD5E-s38139--cbfdd28f5f866900cedead4fc11e59af.nii.gz

NYU/sub-0050956/mri/hammers_sub-0050956_T1w.csv

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+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU/sub-0050956/mri/hammers_sub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/ibsr_sub-0050956_T1w.csv

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NYU/sub-0050956/mri/ibsr_sub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/it_sub-0050956_T1w_affine_reorient.mat

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NYU/sub-0050956/mri/it_sub-0050956_T1w_rigid_reorient.mat

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+../../../.git/annex/objects/pv/k2/MD5E-s284--cac044dbc52d8f1148d5562eb0616b6d.mat/MD5E-s284--cac044dbc52d8f1148d5562eb0616b6d.mat

NYU/sub-0050956/mri/iy_sub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/julichbrain_sub-0050956_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU/sub-0050956/mri/julichbrain_sub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/lpba40_sub-0050956_T1w.csv

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NYU/sub-0050956/mri/lpba40_sub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/m0wp1sub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/m0wp2sub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/m0wp3sub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/mori_sub-0050956_T1w.csv

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NYU/sub-0050956/mri/mori_sub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/mwp1sub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/mwp2sub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/mwp3sub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/neuromorphometrics_sub-0050956_T1w.csv

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NYU/sub-0050956/mri/neuromorphometrics_sub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/p0sub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/p1sub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/p2sub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/p3sub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/rp1sub-0050956_T1w_affine.nii.gz

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NYU/sub-0050956/mri/rp2sub-0050956_T1w_affine.nii.gz

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NYU/sub-0050956/mri/rp3sub-0050956_T1w_affine.nii.gz

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NYU/sub-0050956/mri/t_sub-0050956_T1w_affine_reorient.mat

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NYU/sub-0050956/mri/t_sub-0050956_T1w_rigid_reorient.mat

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NYU/sub-0050956/mri/thalamus_sub-0050956_T1w.csv

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NYU/sub-0050956/mri/thalamus_sub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/wj_sub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/wmisub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/wmsub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/wp0sub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/wp1sub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/wp2sub-0050956_T1w.nii.gz

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NYU/sub-0050956/mri/wp3sub-0050956_T1w.nii.gz

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