[DATALAD RUNCMD] Compute Trinity/sub-0050240

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Trinity/sub-0050240/anat/sub-0050240_T1w.nii.gz"
 ],
 "outputs": [
  "Trinity/sub-0050240"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Trinity/sub-0050240/label/catROI_sub-0050240_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/mW/wP/MD5E-s61309--ed9dd4a505f59c311e26dbde691313f1.mat/MD5E-s61309--ed9dd4a505f59c311e26dbde691313f1.mat

Trinity/sub-0050240/label/catROI_sub-0050240_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/K5/4P/MD5E-s188770--4df531f6dfb23054599579d3922df87d.xml/MD5E-s188770--4df531f6dfb23054599579d3922df87d.xml

Trinity/sub-0050240/label/catROIs_sub-0050240_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/75/jz/MD5E-s120034--c770f01d3027796d0dfeb4bc5c635afc.mat/MD5E-s120034--c770f01d3027796d0dfeb4bc5c635afc.mat

Trinity/sub-0050240/label/catROIs_sub-0050240_T1w.xml

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+../../../.git/annex/objects/6q/7w/MD5E-s332176--6ab75d6c7005a1d7b46664b87cf8a454.xml/MD5E-s332176--6ab75d6c7005a1d7b46664b87cf8a454.xml

Trinity/sub-0050240/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050240_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050240/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050240_T1w.csv

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Trinity/sub-0050240/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050240_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050240/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050240_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Trinity/sub-0050240/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050240_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/m0/2Z/MD5E-s283325--339ad5ff4d6841101787146e218e1212.nii.gz/MD5E-s283325--339ad5ff4d6841101787146e218e1212.nii.gz

Trinity/sub-0050240/mri/Tian_Subcortex_S2_7T_sub-0050240_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050240/mri/Tian_Subcortex_S2_7T_sub-0050240_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050240/mri/aal3_sub-0050240_T1w.csv

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Trinity/sub-0050240/mri/aal3_sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/anatomy3_sub-0050240_T1w.csv

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Trinity/sub-0050240/mri/anatomy3_sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/anon_misub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/anon_msub-0050240_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WG/4w/MD5E-s8690474--6fe1f8d0c39420ae5622d7ebe0826405.nii.gz/MD5E-s8690474--6fe1f8d0c39420ae5622d7ebe0826405.nii.gz

Trinity/sub-0050240/mri/cat_sub-0050240_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050240/mri/cobra_sub-0050240_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050240/mri/cobra_sub-0050240_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050240/mri/hammers_sub-0050240_T1w.csv

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Trinity/sub-0050240/mri/hammers_sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/ibsr_sub-0050240_T1w.csv

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Trinity/sub-0050240/mri/ibsr_sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/it_sub-0050240_T1w_affine_reorient.mat

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Trinity/sub-0050240/mri/it_sub-0050240_T1w_rigid_reorient.mat

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Trinity/sub-0050240/mri/iy_sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/julichbrain_sub-0050240_T1w.csv

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Trinity/sub-0050240/mri/julichbrain_sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/lpba40_sub-0050240_T1w.csv

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Trinity/sub-0050240/mri/lpba40_sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/m0wp1sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/m0wp2sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/m0wp3sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/mori_sub-0050240_T1w.csv

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Trinity/sub-0050240/mri/mori_sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/mwp1sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/mwp2sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/mwp3sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/neuromorphometrics_sub-0050240_T1w.csv

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Trinity/sub-0050240/mri/neuromorphometrics_sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/p0sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/p1sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/p2sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/p3sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/rp1sub-0050240_T1w_affine.nii.gz

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Trinity/sub-0050240/mri/rp2sub-0050240_T1w_affine.nii.gz

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Trinity/sub-0050240/mri/rp3sub-0050240_T1w_affine.nii.gz

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Trinity/sub-0050240/mri/t_sub-0050240_T1w_affine_reorient.mat

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Trinity/sub-0050240/mri/t_sub-0050240_T1w_rigid_reorient.mat

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Trinity/sub-0050240/mri/thalamus_sub-0050240_T1w.csv

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Trinity/sub-0050240/mri/thalamus_sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/wj_sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/wmisub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/wp0sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/wp2sub-0050240_T1w.nii.gz

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Trinity/sub-0050240/mri/wp3sub-0050240_T1w.nii.gz

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