[DATALAD RUNCMD] Compute Olin/sub-0050108

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Olin/sub-0050108/anat/sub-0050108_T1w.nii.gz"
 ],
 "outputs": [
  "Olin/sub-0050108"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Olin/sub-0050108/label/catROI_sub-0050108_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/z6/P5/MD5E-s61243--4906f801a361549e5a77c16067789590.mat/MD5E-s61243--4906f801a361549e5a77c16067789590.mat

Olin/sub-0050108/label/catROI_sub-0050108_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/K0/z5/MD5E-s188667--4a213d9db1447484955a744ad3d5a983.xml/MD5E-s188667--4a213d9db1447484955a744ad3d5a983.xml

Olin/sub-0050108/label/catROIs_sub-0050108_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/4w/km/MD5E-s120119--2dcb808445d361ebca8964d07f39b9f8.mat/MD5E-s120119--2dcb808445d361ebca8964d07f39b9f8.mat

Olin/sub-0050108/label/catROIs_sub-0050108_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/1k/qg/MD5E-s332179--36e6465fa3b04f97329dd5445446986f.xml/MD5E-s332179--36e6465fa3b04f97329dd5445446986f.xml

Olin/sub-0050108/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050108_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Olin/sub-0050108/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050108_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z3/gZ/MD5E-s178701--2e8cb6bba067653f9989d3eca54aefd9.nii.gz/MD5E-s178701--2e8cb6bba067653f9989d3eca54aefd9.nii.gz

Olin/sub-0050108/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050108_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Olin/sub-0050108/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050108_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2Z/QZ/MD5E-s198937--cda0a8c47733bd5e3adbfacfa33ce564.nii.gz/MD5E-s198937--cda0a8c47733bd5e3adbfacfa33ce564.nii.gz

Olin/sub-0050108/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050108_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Olin/sub-0050108/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050108_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GP/pM/MD5E-s255194--671d7f3e8f267288bc8073438321e295.nii.gz/MD5E-s255194--671d7f3e8f267288bc8073438321e295.nii.gz

Olin/sub-0050108/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050108_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Olin/sub-0050108/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050108_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jx/Zf/MD5E-s284288--a97e4c9edde8581dd594a51bc0f21fa9.nii.gz/MD5E-s284288--a97e4c9edde8581dd594a51bc0f21fa9.nii.gz

Olin/sub-0050108/mri/Tian_Subcortex_S2_7T_sub-0050108_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Olin/sub-0050108/mri/Tian_Subcortex_S2_7T_sub-0050108_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PP/q6/MD5E-s23121--94d3edbc3ca851dd18fdbff529ddff7d.nii.gz/MD5E-s23121--94d3edbc3ca851dd18fdbff529ddff7d.nii.gz

Olin/sub-0050108/mri/aal3_sub-0050108_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Olin/sub-0050108/mri/aal3_sub-0050108_T1w.nii.gz

@@ -0,0 +1 @@
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Olin/sub-0050108/mri/anatomy3_sub-0050108_T1w.csv

@@ -0,0 +1 @@
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Olin/sub-0050108/mri/anatomy3_sub-0050108_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/QK/m2/MD5E-s146882--46e5ee483d0f5aff98cd69aefe4b4fd1.nii.gz/MD5E-s146882--46e5ee483d0f5aff98cd69aefe4b4fd1.nii.gz

Olin/sub-0050108/mri/anon_misub-0050108_T1w.nii.gz

@@ -0,0 +1 @@
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Olin/sub-0050108/mri/anon_msub-0050108_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xj/mm/MD5E-s10103814--330c5bf765d4a280ae19ea50d29cc242.nii.gz/MD5E-s10103814--330c5bf765d4a280ae19ea50d29cc242.nii.gz

Olin/sub-0050108/mri/cat_sub-0050108_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/57/XW/MD5E-s104077--56ddff14daeaebb3ccba8a6bbf4eeaf7.nii.gz/MD5E-s104077--56ddff14daeaebb3ccba8a6bbf4eeaf7.nii.gz

Olin/sub-0050108/mri/cobra_sub-0050108_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Olin/sub-0050108/mri/cobra_sub-0050108_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/g3/qV/MD5E-s50944--94f0af63c57bf5bde8993a2a00b2343b.nii.gz/MD5E-s50944--94f0af63c57bf5bde8993a2a00b2343b.nii.gz

Olin/sub-0050108/mri/hammers_sub-0050108_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Olin/sub-0050108/mri/hammers_sub-0050108_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/30/pZ/MD5E-s152794--b2c77bed32f82c5ef42f7e6dac9471e3.nii.gz/MD5E-s152794--b2c77bed32f82c5ef42f7e6dac9471e3.nii.gz

Olin/sub-0050108/mri/ibsr_sub-0050108_T1w.csv

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+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Olin/sub-0050108/mri/ibsr_sub-0050108_T1w.nii.gz

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Olin/sub-0050108/mri/it_sub-0050108_T1w_affine_reorient.mat

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+../../../.git/annex/objects/g5/6q/MD5E-s283--5de3c1f74679994afb093368a12fead2.mat/MD5E-s283--5de3c1f74679994afb093368a12fead2.mat

Olin/sub-0050108/mri/it_sub-0050108_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/3g/4m/MD5E-s283--a6fc122daea45b512b700b5fc05de414.mat/MD5E-s283--a6fc122daea45b512b700b5fc05de414.mat

Olin/sub-0050108/mri/iy_sub-0050108_T1w.nii.gz

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Olin/sub-0050108/mri/julichbrain_sub-0050108_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Olin/sub-0050108/mri/julichbrain_sub-0050108_T1w.nii.gz

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Olin/sub-0050108/mri/lpba40_sub-0050108_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Olin/sub-0050108/mri/lpba40_sub-0050108_T1w.nii.gz

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Olin/sub-0050108/mri/m0wp1sub-0050108_T1w.nii.gz

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Olin/sub-0050108/mri/m0wp2sub-0050108_T1w.nii.gz

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Olin/sub-0050108/mri/m0wp3sub-0050108_T1w.nii.gz

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Olin/sub-0050108/mri/mori_sub-0050108_T1w.csv

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Olin/sub-0050108/mri/mori_sub-0050108_T1w.nii.gz

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Olin/sub-0050108/mri/mwp1sub-0050108_T1w.nii.gz

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Olin/sub-0050108/mri/mwp2sub-0050108_T1w.nii.gz

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Olin/sub-0050108/mri/mwp3sub-0050108_T1w.nii.gz

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Olin/sub-0050108/mri/neuromorphometrics_sub-0050108_T1w.csv

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Olin/sub-0050108/mri/neuromorphometrics_sub-0050108_T1w.nii.gz

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Olin/sub-0050108/mri/p0sub-0050108_T1w.nii.gz

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Olin/sub-0050108/mri/p1sub-0050108_T1w.nii.gz

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Olin/sub-0050108/mri/p2sub-0050108_T1w.nii.gz

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Olin/sub-0050108/mri/p3sub-0050108_T1w.nii.gz

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Olin/sub-0050108/mri/rp1sub-0050108_T1w_affine.nii.gz

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Olin/sub-0050108/mri/rp2sub-0050108_T1w_affine.nii.gz

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Olin/sub-0050108/mri/rp3sub-0050108_T1w_affine.nii.gz

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Olin/sub-0050108/mri/t_sub-0050108_T1w_affine_reorient.mat

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Olin/sub-0050108/mri/t_sub-0050108_T1w_rigid_reorient.mat

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Olin/sub-0050108/mri/thalamus_sub-0050108_T1w.csv

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Olin/sub-0050108/mri/thalamus_sub-0050108_T1w.nii.gz

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Olin/sub-0050108/mri/wj_sub-0050108_T1w.nii.gz

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Olin/sub-0050108/mri/wmisub-0050108_T1w.nii.gz

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Olin/sub-0050108/mri/wmsub-0050108_T1w.nii.gz

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Olin/sub-0050108/mri/wp0sub-0050108_T1w.nii.gz

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Olin/sub-0050108/mri/wp1sub-0050108_T1w.nii.gz

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Olin/sub-0050108/mri/wp2sub-0050108_T1w.nii.gz

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