[DATALAD RUNCMD] Compute USM/sub-0050451

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050451/anat/sub-0050451_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050451"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050451/label/catROI_sub-0050451_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZJ/7v/MD5E-s61454--047915756eccd3b8d72f2adee3556a5c.mat/MD5E-s61454--047915756eccd3b8d72f2adee3556a5c.mat

USM/sub-0050451/label/catROI_sub-0050451_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/XV/Qg/MD5E-s189211--0b1837d62bb1e700150c96ebdeb074d0.xml/MD5E-s189211--0b1837d62bb1e700150c96ebdeb074d0.xml

USM/sub-0050451/label/catROIs_sub-0050451_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/pv/gg/MD5E-s120105--e686d6cc281f592490ed646a8ebeb57b.mat/MD5E-s120105--e686d6cc281f592490ed646a8ebeb57b.mat

USM/sub-0050451/label/catROIs_sub-0050451_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/f4/xk/MD5E-s332163--44edb6d536a2719ff402fdbfa0f32ee0.xml/MD5E-s332163--44edb6d536a2719ff402fdbfa0f32ee0.xml

USM/sub-0050451/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050451_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050451/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jp/PK/MD5E-s375145--c9c396d11610d573a0969097db396ec7.nii.gz/MD5E-s375145--c9c396d11610d573a0969097db396ec7.nii.gz

USM/sub-0050451/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050451_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050451/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3p/w9/MD5E-s417194--722e4327559c59387d9ac74c7c51946a.nii.gz/MD5E-s417194--722e4327559c59387d9ac74c7c51946a.nii.gz

USM/sub-0050451/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050451_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050451/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZX/gm/MD5E-s603281--2107c0843656875d1e59920a4dc72ef4.nii.gz/MD5E-s603281--2107c0843656875d1e59920a4dc72ef4.nii.gz

USM/sub-0050451/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050451_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050451/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zW/8p/MD5E-s662746--9589ef8cc59fe1f54ec39d1c18e37fe6.nii.gz/MD5E-s662746--9589ef8cc59fe1f54ec39d1c18e37fe6.nii.gz

USM/sub-0050451/mri/Tian_Subcortex_S2_7T_sub-0050451_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050451/mri/Tian_Subcortex_S2_7T_sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wj/3V/MD5E-s67590--88ffe4e0170f0e0446ad7dd40a7bb1ba.nii.gz/MD5E-s67590--88ffe4e0170f0e0446ad7dd40a7bb1ba.nii.gz

USM/sub-0050451/mri/aal3_sub-0050451_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050451/mri/aal3_sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/kM/MD5E-s426115--0cd9fd2e72456ce2ca2f78b32279fdc9.nii.gz/MD5E-s426115--0cd9fd2e72456ce2ca2f78b32279fdc9.nii.gz

USM/sub-0050451/mri/anatomy3_sub-0050451_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050451/mri/anatomy3_sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MK/p3/MD5E-s314970--637aa429eb2dd14d01899e68e602129c.nii.gz/MD5E-s314970--637aa429eb2dd14d01899e68e602129c.nii.gz

USM/sub-0050451/mri/anon_misub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z3/v5/MD5E-s18367146--c91478e272e79129195eebfcb44f41d5.nii.gz/MD5E-s18367146--c91478e272e79129195eebfcb44f41d5.nii.gz

USM/sub-0050451/mri/anon_msub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KP/gP/MD5E-s33625941--27cc1155aabd7804e74d6f9c54eb7cc1.nii.gz/MD5E-s33625941--27cc1155aabd7804e74d6f9c54eb7cc1.nii.gz

USM/sub-0050451/mri/cat_sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z1/Vx/MD5E-s235339--1cabd8429298449c312e7483fa93b197.nii.gz/MD5E-s235339--1cabd8429298449c312e7483fa93b197.nii.gz

USM/sub-0050451/mri/cobra_sub-0050451_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050451/mri/cobra_sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fk/fK/MD5E-s124278--276dc607155ac11fe17ed799b7f89137.nii.gz/MD5E-s124278--276dc607155ac11fe17ed799b7f89137.nii.gz

USM/sub-0050451/mri/hammers_sub-0050451_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050451/mri/hammers_sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mz/5w/MD5E-s338092--6d022d4c1413c1bc487644971dd0bcfd.nii.gz/MD5E-s338092--6d022d4c1413c1bc487644971dd0bcfd.nii.gz

USM/sub-0050451/mri/ibsr_sub-0050451_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050451/mri/ibsr_sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XJ/Vj/MD5E-s360576--4c28073c92f96319db5414c4dbbc3a38.nii.gz/MD5E-s360576--4c28073c92f96319db5414c4dbbc3a38.nii.gz

USM/sub-0050451/mri/it_sub-0050451_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/28/k8/MD5E-s283--bb6b14f7d74ce6d1a5a9a6cb536cff29.mat/MD5E-s283--bb6b14f7d74ce6d1a5a9a6cb536cff29.mat

USM/sub-0050451/mri/it_sub-0050451_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/x3/Q1/MD5E-s282--a34e19c0f1d70c0ccd9c10327558e616.mat/MD5E-s282--a34e19c0f1d70c0ccd9c10327558e616.mat

USM/sub-0050451/mri/iy_sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8Z/Pq/MD5E-s152428006--a85b1a84b54f1d6c23c62aace46f90cd.nii.gz/MD5E-s152428006--a85b1a84b54f1d6c23c62aace46f90cd.nii.gz

USM/sub-0050451/mri/julichbrain_sub-0050451_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050451/mri/julichbrain_sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1k/Vj/MD5E-s446884--5b37e4de1526f5fbcba001d3cae98842.nii.gz/MD5E-s446884--5b37e4de1526f5fbcba001d3cae98842.nii.gz

USM/sub-0050451/mri/lpba40_sub-0050451_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050451/mri/lpba40_sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WQ/zm/MD5E-s334074--070dfd606bc72ba978d626b2d924dd07.nii.gz/MD5E-s334074--070dfd606bc72ba978d626b2d924dd07.nii.gz

USM/sub-0050451/mri/m0wp1sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050451/mri/m0wp2sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050451/mri/m0wp3sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050451/mri/mori_sub-0050451_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

USM/sub-0050451/mri/mori_sub-0050451_T1w.nii.gz

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USM/sub-0050451/mri/mwp1sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3q/VV/MD5E-s2573230--0a208f3611218969a2a04b971ba20c3b.nii.gz/MD5E-s2573230--0a208f3611218969a2a04b971ba20c3b.nii.gz

USM/sub-0050451/mri/mwp2sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050451/mri/mwp3sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2w/Xz/MD5E-s2404001--ef4da3c139e700f853098c759319461d.nii.gz/MD5E-s2404001--ef4da3c139e700f853098c759319461d.nii.gz

USM/sub-0050451/mri/neuromorphometrics_sub-0050451_T1w.csv

@@ -0,0 +1 @@
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USM/sub-0050451/mri/neuromorphometrics_sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050451/mri/p0sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050451/mri/p1sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050451/mri/p2sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050451/mri/p3sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050451/mri/rp1sub-0050451_T1w_affine.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050451/mri/rp2sub-0050451_T1w_affine.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050451/mri/rp3sub-0050451_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/XJ/MD5E-s234333--60ac4c3734406b6a8c414ab7ce44382f.nii.gz/MD5E-s234333--60ac4c3734406b6a8c414ab7ce44382f.nii.gz

USM/sub-0050451/mri/t_sub-0050451_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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USM/sub-0050451/mri/t_sub-0050451_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/kF/47/MD5E-s283--d7ddb8f03606450bddca02ecf27494b5.mat/MD5E-s283--d7ddb8f03606450bddca02ecf27494b5.mat

USM/sub-0050451/mri/thalamus_sub-0050451_T1w.csv

@@ -0,0 +1 @@
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USM/sub-0050451/mri/thalamus_sub-0050451_T1w.nii.gz

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USM/sub-0050451/mri/wj_sub-0050451_T1w.nii.gz

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USM/sub-0050451/mri/wmisub-0050451_T1w.nii.gz

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USM/sub-0050451/mri/wmsub-0050451_T1w.nii.gz

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USM/sub-0050451/mri/wp0sub-0050451_T1w.nii.gz

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USM/sub-0050451/mri/wp1sub-0050451_T1w.nii.gz

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USM/sub-0050451/mri/wp2sub-0050451_T1w.nii.gz

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USM/sub-0050451/mri/wp3sub-0050451_T1w.nii.gz

@@ -0,0 +1 @@
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