[DATALAD RUNCMD] Compute Leuven_1/sub-0050708

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Leuven_1/sub-0050708/anat/sub-0050708_T1w.nii.gz"
 ],
 "outputs": [
  "Leuven_1/sub-0050708"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Leuven_1/sub-0050708/label/catROI_sub-0050708_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/2j/g8/MD5E-s61300--ccd73ee68efed811193d4699cb884350.mat/MD5E-s61300--ccd73ee68efed811193d4699cb884350.mat

Leuven_1/sub-0050708/label/catROI_sub-0050708_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/3f/WP/MD5E-s188982--e756cf8639c69df9e9910204b8f54e9c.xml/MD5E-s188982--e756cf8639c69df9e9910204b8f54e9c.xml

Leuven_1/sub-0050708/label/catROIs_sub-0050708_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/XZ/88/MD5E-s120102--7c323e373cb7950ad1eca3aea64cef08.mat/MD5E-s120102--7c323e373cb7950ad1eca3aea64cef08.mat

Leuven_1/sub-0050708/label/catROIs_sub-0050708_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/fK/47/MD5E-s332060--cb7b554ebf907ea812f3b473702eec93.xml/MD5E-s332060--cb7b554ebf907ea812f3b473702eec93.xml

Leuven_1/sub-0050708/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050708_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Leuven_1/sub-0050708/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050708_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zg/Z8/MD5E-s168107--a3c00ad31a5540dbac5ec57ed3624df6.nii.gz/MD5E-s168107--a3c00ad31a5540dbac5ec57ed3624df6.nii.gz

Leuven_1/sub-0050708/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050708_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Leuven_1/sub-0050708/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050708_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/66/4J/MD5E-s187644--b708aad918c2b881bf7324d06d4f7b13.nii.gz/MD5E-s187644--b708aad918c2b881bf7324d06d4f7b13.nii.gz

Leuven_1/sub-0050708/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050708_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Leuven_1/sub-0050708/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050708_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4V/K3/MD5E-s238253--4d4c2deddd5c051838c02177bc8b415a.nii.gz/MD5E-s238253--4d4c2deddd5c051838c02177bc8b415a.nii.gz

Leuven_1/sub-0050708/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050708_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Leuven_1/sub-0050708/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050708_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f3/kx/MD5E-s265132--2bb2b3df14edc052dd79951a95e85459.nii.gz/MD5E-s265132--2bb2b3df14edc052dd79951a95e85459.nii.gz

Leuven_1/sub-0050708/mri/Tian_Subcortex_S2_7T_sub-0050708_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Leuven_1/sub-0050708/mri/Tian_Subcortex_S2_7T_sub-0050708_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W3/v2/MD5E-s26055--279741270d88e47bb3b1872eae35e986.nii.gz/MD5E-s26055--279741270d88e47bb3b1872eae35e986.nii.gz

Leuven_1/sub-0050708/mri/aal3_sub-0050708_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Leuven_1/sub-0050708/mri/aal3_sub-0050708_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q4/f3/MD5E-s193746--93f8e01ec26ad58d6ffb6cbb395a784f.nii.gz/MD5E-s193746--93f8e01ec26ad58d6ffb6cbb395a784f.nii.gz

Leuven_1/sub-0050708/mri/anatomy3_sub-0050708_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Leuven_1/sub-0050708/mri/anatomy3_sub-0050708_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gV/kF/MD5E-s133975--d001059ed479841e2638fef21c4eec5d.nii.gz/MD5E-s133975--d001059ed479841e2638fef21c4eec5d.nii.gz

Leuven_1/sub-0050708/mri/anon_misub-0050708_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ww/Mp/MD5E-s5171779--c4da8d7615c8e2530aaf5a8c3dcdfefe.nii.gz/MD5E-s5171779--c4da8d7615c8e2530aaf5a8c3dcdfefe.nii.gz

Leuven_1/sub-0050708/mri/anon_msub-0050708_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M3/Pf/MD5E-s11725723--09b75be2c07f2f127c1c24569725bdcb.nii.gz/MD5E-s11725723--09b75be2c07f2f127c1c24569725bdcb.nii.gz

Leuven_1/sub-0050708/mri/cat_sub-0050708_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F8/6m/MD5E-s105171--3e30526834806ceb000c6a81ac3c56b4.nii.gz/MD5E-s105171--3e30526834806ceb000c6a81ac3c56b4.nii.gz

Leuven_1/sub-0050708/mri/cobra_sub-0050708_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Leuven_1/sub-0050708/mri/cobra_sub-0050708_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V0/XM/MD5E-s52186--fffbba8f383b09fe378037eaebcdfbed.nii.gz/MD5E-s52186--fffbba8f383b09fe378037eaebcdfbed.nii.gz

Leuven_1/sub-0050708/mri/hammers_sub-0050708_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Leuven_1/sub-0050708/mri/hammers_sub-0050708_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZQ/7z/MD5E-s150638--bf18371f2f6f27294dd1f39db8384bd3.nii.gz/MD5E-s150638--bf18371f2f6f27294dd1f39db8384bd3.nii.gz

Leuven_1/sub-0050708/mri/ibsr_sub-0050708_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Leuven_1/sub-0050708/mri/ibsr_sub-0050708_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qv/1q/MD5E-s155363--7bf3d10433a6a0a9f32466da0bb1870c.nii.gz/MD5E-s155363--7bf3d10433a6a0a9f32466da0bb1870c.nii.gz

Leuven_1/sub-0050708/mri/it_sub-0050708_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/q2/k7/MD5E-s283--4d2673f2149d5843ef03f6513f323259.mat/MD5E-s283--4d2673f2149d5843ef03f6513f323259.mat

Leuven_1/sub-0050708/mri/it_sub-0050708_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/8z/7X/MD5E-s282--eb0729589b7dcb95291d0c8e42c97992.mat/MD5E-s282--eb0729589b7dcb95291d0c8e42c97992.mat

Leuven_1/sub-0050708/mri/iy_sub-0050708_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6j/q8/MD5E-s42429250--64b670c029b769e116720c93ec40b218.nii.gz/MD5E-s42429250--64b670c029b769e116720c93ec40b218.nii.gz

Leuven_1/sub-0050708/mri/julichbrain_sub-0050708_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Leuven_1/sub-0050708/mri/julichbrain_sub-0050708_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jW/Z1/MD5E-s200444--1ee28e4a0765d63592d42bf81c03c807.nii.gz/MD5E-s200444--1ee28e4a0765d63592d42bf81c03c807.nii.gz

Leuven_1/sub-0050708/mri/lpba40_sub-0050708_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Leuven_1/sub-0050708/mri/lpba40_sub-0050708_T1w.nii.gz

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Leuven_1/sub-0050708/mri/m0wp1sub-0050708_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WX/Z8/MD5E-s2616961--5c9f0c9bc5136bcf5dccee270255ad68.nii.gz/MD5E-s2616961--5c9f0c9bc5136bcf5dccee270255ad68.nii.gz

Leuven_1/sub-0050708/mri/m0wp2sub-0050708_T1w.nii.gz

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Leuven_1/sub-0050708/mri/m0wp3sub-0050708_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050708/mri/mori_sub-0050708_T1w.csv

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Leuven_1/sub-0050708/mri/mori_sub-0050708_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050708/mri/mwp1sub-0050708_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kF/k0/MD5E-s2622288--d53e53386d8e1d44949a04dd7dc518c9.nii.gz/MD5E-s2622288--d53e53386d8e1d44949a04dd7dc518c9.nii.gz

Leuven_1/sub-0050708/mri/mwp2sub-0050708_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xg/8v/MD5E-s2297423--081c63cd67412e536ee61d74ba86dd3e.nii.gz/MD5E-s2297423--081c63cd67412e536ee61d74ba86dd3e.nii.gz

Leuven_1/sub-0050708/mri/mwp3sub-0050708_T1w.nii.gz

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Leuven_1/sub-0050708/mri/neuromorphometrics_sub-0050708_T1w.csv

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Leuven_1/sub-0050708/mri/neuromorphometrics_sub-0050708_T1w.nii.gz

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Leuven_1/sub-0050708/mri/p0sub-0050708_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vx/mx/MD5E-s600926--3d99d696af324d0cb07783b11e050b72.nii.gz/MD5E-s600926--3d99d696af324d0cb07783b11e050b72.nii.gz

Leuven_1/sub-0050708/mri/p1sub-0050708_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050708/mri/p2sub-0050708_T1w.nii.gz

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Leuven_1/sub-0050708/mri/p3sub-0050708_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050708/mri/rp1sub-0050708_T1w_affine.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050708/mri/rp2sub-0050708_T1w_affine.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050708/mri/rp3sub-0050708_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9P/J6/MD5E-s297974--42f065b4e6650b56d7b6fdcac25b5390.nii.gz/MD5E-s297974--42f065b4e6650b56d7b6fdcac25b5390.nii.gz

Leuven_1/sub-0050708/mri/t_sub-0050708_T1w_affine_reorient.mat

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Leuven_1/sub-0050708/mri/t_sub-0050708_T1w_rigid_reorient.mat

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Leuven_1/sub-0050708/mri/thalamus_sub-0050708_T1w.csv

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Leuven_1/sub-0050708/mri/thalamus_sub-0050708_T1w.nii.gz

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Leuven_1/sub-0050708/mri/wj_sub-0050708_T1w.nii.gz

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Leuven_1/sub-0050708/mri/wmisub-0050708_T1w.nii.gz

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Leuven_1/sub-0050708/mri/wmsub-0050708_T1w.nii.gz

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Leuven_1/sub-0050708/mri/wp0sub-0050708_T1w.nii.gz

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Leuven_1/sub-0050708/mri/wp1sub-0050708_T1w.nii.gz

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Leuven_1/sub-0050708/mri/wp2sub-0050708_T1w.nii.gz

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Leuven_1/sub-0050708/mri/wp3sub-0050708_T1w.nii.gz

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