[DATALAD RUNCMD] Compute Trinity/sub-0050271

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Trinity/sub-0050271/anat/sub-0050271_T1w.nii.gz"
 ],
 "outputs": [
  "Trinity/sub-0050271"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Trinity/sub-0050271/label/catROI_sub-0050271_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/z6/jx/MD5E-s61342--15c919d39bd6d2c0a38951250b506c21.mat/MD5E-s61342--15c919d39bd6d2c0a38951250b506c21.mat

Trinity/sub-0050271/label/catROI_sub-0050271_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/FP/1X/MD5E-s188801--41b10cd094eb1bef70ed7e48e96f8534.xml/MD5E-s188801--41b10cd094eb1bef70ed7e48e96f8534.xml

Trinity/sub-0050271/label/catROIs_sub-0050271_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/gM/xM/MD5E-s120053--457328a816af2938de7fcaa09972aa38.mat/MD5E-s120053--457328a816af2938de7fcaa09972aa38.mat

Trinity/sub-0050271/label/catROIs_sub-0050271_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/7Z/fz/MD5E-s332142--976d46eb82b6657d977d92139248bd18.xml/MD5E-s332142--976d46eb82b6657d977d92139248bd18.xml

Trinity/sub-0050271/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050271_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050271/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050271_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q6/0J/MD5E-s169401--53ffadf49a727f2845d7aee5b780fb74.nii.gz/MD5E-s169401--53ffadf49a727f2845d7aee5b780fb74.nii.gz

Trinity/sub-0050271/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050271_T1w.csv

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Trinity/sub-0050271/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050271_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050271/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050271_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050271/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050271_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zg/K0/MD5E-s283815--d3fb89d24823624964bf590915d939b3.nii.gz/MD5E-s283815--d3fb89d24823624964bf590915d939b3.nii.gz

Trinity/sub-0050271/mri/Tian_Subcortex_S2_7T_sub-0050271_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050271/mri/Tian_Subcortex_S2_7T_sub-0050271_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vx/Pw/MD5E-s23582--726282360015cdfb1935b14ce5f8b8b1.nii.gz/MD5E-s23582--726282360015cdfb1935b14ce5f8b8b1.nii.gz

Trinity/sub-0050271/mri/aal3_sub-0050271_T1w.csv

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Trinity/sub-0050271/mri/aal3_sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/anatomy3_sub-0050271_T1w.csv

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Trinity/sub-0050271/mri/anatomy3_sub-0050271_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050271/mri/anon_misub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/anon_msub-0050271_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050271/mri/cat_sub-0050271_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050271/mri/cobra_sub-0050271_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050271/mri/cobra_sub-0050271_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050271/mri/hammers_sub-0050271_T1w.csv

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+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Trinity/sub-0050271/mri/hammers_sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/ibsr_sub-0050271_T1w.csv

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Trinity/sub-0050271/mri/ibsr_sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/it_sub-0050271_T1w_affine_reorient.mat

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Trinity/sub-0050271/mri/it_sub-0050271_T1w_rigid_reorient.mat

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Trinity/sub-0050271/mri/iy_sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/julichbrain_sub-0050271_T1w.csv

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Trinity/sub-0050271/mri/julichbrain_sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/lpba40_sub-0050271_T1w.csv

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Trinity/sub-0050271/mri/lpba40_sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/m0wp1sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/m0wp2sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/m0wp3sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/mori_sub-0050271_T1w.csv

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Trinity/sub-0050271/mri/mori_sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/mwp1sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/mwp2sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/mwp3sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/neuromorphometrics_sub-0050271_T1w.csv

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Trinity/sub-0050271/mri/neuromorphometrics_sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/p0sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/p1sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/p2sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/p3sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/rp1sub-0050271_T1w_affine.nii.gz

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Trinity/sub-0050271/mri/rp2sub-0050271_T1w_affine.nii.gz

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Trinity/sub-0050271/mri/rp3sub-0050271_T1w_affine.nii.gz

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Trinity/sub-0050271/mri/t_sub-0050271_T1w_affine_reorient.mat

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Trinity/sub-0050271/mri/t_sub-0050271_T1w_rigid_reorient.mat

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Trinity/sub-0050271/mri/thalamus_sub-0050271_T1w.csv

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Trinity/sub-0050271/mri/thalamus_sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/wj_sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/wmisub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/wmsub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/wp0sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/wp1sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/wp2sub-0050271_T1w.nii.gz

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Trinity/sub-0050271/mri/wp3sub-0050271_T1w.nii.gz

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