[DATALAD RUNCMD] Compute MaxMun_d/sub-0051352

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/MaxMun_d/sub-0051352/anat/sub-0051352_T1w.nii.gz"
 ],
 "outputs": [
  "MaxMun_d/sub-0051352"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MaxMun_d/sub-0051352/label/catROI_sub-0051352_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/8Q/V2/MD5E-s58119--1b33741d16d5a205d700d053437db0a0.mat/MD5E-s58119--1b33741d16d5a205d700d053437db0a0.mat

MaxMun_d/sub-0051352/label/catROI_sub-0051352_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/9f/0X/MD5E-s188787--1e5a1d5b3c59c78b66d7005484e286ab.xml/MD5E-s188787--1e5a1d5b3c59c78b66d7005484e286ab.xml

MaxMun_d/sub-0051352/label/catROIs_sub-0051352_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/1Q/MD5E-s120291--2f262a8551dca2d9d766bf5133ae7287.mat/MD5E-s120291--2f262a8551dca2d9d766bf5133ae7287.mat

MaxMun_d/sub-0051352/label/catROIs_sub-0051352_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/5K/WF/MD5E-s332117--fbc5a37df3742a3e4b423a4bcd1a834c.xml/MD5E-s332117--fbc5a37df3742a3e4b423a4bcd1a834c.xml

MaxMun_d/sub-0051352/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051352_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MaxMun_d/sub-0051352/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PF/MF/MD5E-s169469--b2054e8783fcefb63c6e8f9fe6e89ba9.nii.gz/MD5E-s169469--b2054e8783fcefb63c6e8f9fe6e89ba9.nii.gz

MaxMun_d/sub-0051352/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051352_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MaxMun_d/sub-0051352/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jw/4m/MD5E-s188064--0d1ee3fb20dc20cae7e858a4a85aa74e.nii.gz/MD5E-s188064--0d1ee3fb20dc20cae7e858a4a85aa74e.nii.gz

MaxMun_d/sub-0051352/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051352_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MaxMun_d/sub-0051352/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3M/7w/MD5E-s253240--f54efb09b04985c48d1f986bc1ea18eb.nii.gz/MD5E-s253240--f54efb09b04985c48d1f986bc1ea18eb.nii.gz

MaxMun_d/sub-0051352/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051352_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MaxMun_d/sub-0051352/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pm/qF/MD5E-s280265--dd9969e5483947cc1d61d12b4aa9bd7b.nii.gz/MD5E-s280265--dd9969e5483947cc1d61d12b4aa9bd7b.nii.gz

MaxMun_d/sub-0051352/mri/Tian_Subcortex_S2_7T_sub-0051352_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MaxMun_d/sub-0051352/mri/Tian_Subcortex_S2_7T_sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wk/59/MD5E-s22906--4ce4c16c86cb385a4315b6f35772a4e7.nii.gz/MD5E-s22906--4ce4c16c86cb385a4315b6f35772a4e7.nii.gz

MaxMun_d/sub-0051352/mri/aal3_sub-0051352_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

MaxMun_d/sub-0051352/mri/aal3_sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qp/3w/MD5E-s189909--531bf3ffb31bc202d034168dd66d1b76.nii.gz/MD5E-s189909--531bf3ffb31bc202d034168dd66d1b76.nii.gz

MaxMun_d/sub-0051352/mri/anatomy3_sub-0051352_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

MaxMun_d/sub-0051352/mri/anatomy3_sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xw/qJ/MD5E-s135725--cea7ea1ef2032555418be7f14b0b10a1.nii.gz/MD5E-s135725--cea7ea1ef2032555418be7f14b0b10a1.nii.gz

MaxMun_d/sub-0051352/mri/anon_misub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w4/jQ/MD5E-s7360577--0c40355f72cce8c181a7016cae7d5d5e.nii.gz/MD5E-s7360577--0c40355f72cce8c181a7016cae7d5d5e.nii.gz

MaxMun_d/sub-0051352/mri/anon_msub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vp/J7/MD5E-s7194192--bffd72da9ea0bbb3975a4bf532d36a65.nii.gz/MD5E-s7194192--bffd72da9ea0bbb3975a4bf532d36a65.nii.gz

MaxMun_d/sub-0051352/mri/cat_sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8p/23/MD5E-s98786--b3ce3cfb863966bde2ea449488b4404d.nii.gz/MD5E-s98786--b3ce3cfb863966bde2ea449488b4404d.nii.gz

MaxMun_d/sub-0051352/mri/cobra_sub-0051352_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MaxMun_d/sub-0051352/mri/cobra_sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wq/gG/MD5E-s47636--fe0d3b033ed0bc043f83faa586957f74.nii.gz/MD5E-s47636--fe0d3b033ed0bc043f83faa586957f74.nii.gz

MaxMun_d/sub-0051352/mri/hammers_sub-0051352_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MaxMun_d/sub-0051352/mri/hammers_sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wj/MZ/MD5E-s150205--3b160d1bb05613a1b1f8cba92c759632.nii.gz/MD5E-s150205--3b160d1bb05613a1b1f8cba92c759632.nii.gz

MaxMun_d/sub-0051352/mri/ibsr_sub-0051352_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MaxMun_d/sub-0051352/mri/ibsr_sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/87/WJ/MD5E-s158569--4f6e178a71a2fd9db17d9e6e8f351d6e.nii.gz/MD5E-s158569--4f6e178a71a2fd9db17d9e6e8f351d6e.nii.gz

MaxMun_d/sub-0051352/mri/it_sub-0051352_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/1W/11/MD5E-s283--aa6e781d102034c9fc5d8520c13e22d2.mat/MD5E-s283--aa6e781d102034c9fc5d8520c13e22d2.mat

MaxMun_d/sub-0051352/mri/it_sub-0051352_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/gP/wx/MD5E-s284--ba7d49aa955f8d09926b9b7c1575108f.mat/MD5E-s284--ba7d49aa955f8d09926b9b7c1575108f.mat

MaxMun_d/sub-0051352/mri/iy_sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WK/kq/MD5E-s45249583--fb39bedec432ceed14ca9acb6fa2323c.nii.gz/MD5E-s45249583--fb39bedec432ceed14ca9acb6fa2323c.nii.gz

MaxMun_d/sub-0051352/mri/julichbrain_sub-0051352_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

MaxMun_d/sub-0051352/mri/julichbrain_sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wq/2j/MD5E-s204476--4f42188c8b448591902900d8b4b527b4.nii.gz/MD5E-s204476--4f42188c8b448591902900d8b4b527b4.nii.gz

MaxMun_d/sub-0051352/mri/lpba40_sub-0051352_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

MaxMun_d/sub-0051352/mri/lpba40_sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z9/P1/MD5E-s147434--bc25bf9d397b6861601f0395e37d622b.nii.gz/MD5E-s147434--bc25bf9d397b6861601f0395e37d622b.nii.gz

MaxMun_d/sub-0051352/mri/m0wp1sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JK/1q/MD5E-s2603365--0d0708773d4c830a118daed59cefdb3e.nii.gz/MD5E-s2603365--0d0708773d4c830a118daed59cefdb3e.nii.gz

MaxMun_d/sub-0051352/mri/m0wp2sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WP/F5/MD5E-s2365428--2578205924d270a59c7885595822094b.nii.gz/MD5E-s2365428--2578205924d270a59c7885595822094b.nii.gz

MaxMun_d/sub-0051352/mri/m0wp3sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wF/Wz/MD5E-s2484655--201e2a53e5fedb9b28587eb9e85700b3.nii.gz/MD5E-s2484655--201e2a53e5fedb9b28587eb9e85700b3.nii.gz

MaxMun_d/sub-0051352/mri/mori_sub-0051352_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

MaxMun_d/sub-0051352/mri/mori_sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9x/1v/MD5E-s175843--77b1bc22ee83e69724b20166a9e01dc9.nii.gz/MD5E-s175843--77b1bc22ee83e69724b20166a9e01dc9.nii.gz

MaxMun_d/sub-0051352/mri/mwp1sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/g2/jx/MD5E-s2605898--8b622c8b3e9b641fa96affae4dc9fb55.nii.gz/MD5E-s2605898--8b622c8b3e9b641fa96affae4dc9fb55.nii.gz

MaxMun_d/sub-0051352/mri/mwp2sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qq/9w/MD5E-s2368118--2f6eafd2804cf23e9f6400dac17d145f.nii.gz/MD5E-s2368118--2f6eafd2804cf23e9f6400dac17d145f.nii.gz

MaxMun_d/sub-0051352/mri/mwp3sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/j3/MD5E-s2480869--32ba07594619c7285dcceb74357f219c.nii.gz/MD5E-s2480869--32ba07594619c7285dcceb74357f219c.nii.gz

MaxMun_d/sub-0051352/mri/neuromorphometrics_sub-0051352_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

MaxMun_d/sub-0051352/mri/neuromorphometrics_sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gV/73/MD5E-s205972--223a7a8e364fb7dc495fadfd5d796e6e.nii.gz/MD5E-s205972--223a7a8e364fb7dc495fadfd5d796e6e.nii.gz

MaxMun_d/sub-0051352/mri/p0sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3m/fz/MD5E-s681198--a52fa1472dbc0a1929475eb38a262c46.nii.gz/MD5E-s681198--a52fa1472dbc0a1929475eb38a262c46.nii.gz

MaxMun_d/sub-0051352/mri/p1sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XZ/M7/MD5E-s735247--4ad40f33d41d250ba5006713a4ff2f2f.nii.gz/MD5E-s735247--4ad40f33d41d250ba5006713a4ff2f2f.nii.gz

MaxMun_d/sub-0051352/mri/p2sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fJ/qk/MD5E-s498450--7a38cb930198efa0eeba2c25181168f2.nii.gz/MD5E-s498450--7a38cb930198efa0eeba2c25181168f2.nii.gz

MaxMun_d/sub-0051352/mri/p3sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0M/w6/MD5E-s384267--f5cf2bcabaa35715d9d6c487dacc86ad.nii.gz/MD5E-s384267--f5cf2bcabaa35715d9d6c487dacc86ad.nii.gz

MaxMun_d/sub-0051352/mri/rp1sub-0051352_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mW/z8/MD5E-s472207--91aeab2d3dc797bc198bf50806874248.nii.gz/MD5E-s472207--91aeab2d3dc797bc198bf50806874248.nii.gz

MaxMun_d/sub-0051352/mri/rp2sub-0051352_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4Z/Pf/MD5E-s334603--cab003a4304d25192d0602b90030c2d2.nii.gz/MD5E-s334603--cab003a4304d25192d0602b90030c2d2.nii.gz

MaxMun_d/sub-0051352/mri/rp3sub-0051352_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/11/mF/MD5E-s288182--9c6b953b5da3f3760c72c2dad552b78f.nii.gz/MD5E-s288182--9c6b953b5da3f3760c72c2dad552b78f.nii.gz

MaxMun_d/sub-0051352/mri/t_sub-0051352_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gm/vm/MD5E-s282--cc8f2ff0db1d3a1d3d51515ae4b7ec2f.mat/MD5E-s282--cc8f2ff0db1d3a1d3d51515ae4b7ec2f.mat

MaxMun_d/sub-0051352/mri/t_sub-0051352_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/3m/13/MD5E-s283--186d5bff5b9de511f9d22d32a837e828.mat/MD5E-s283--186d5bff5b9de511f9d22d32a837e828.mat

MaxMun_d/sub-0051352/mri/thalamus_sub-0051352_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

MaxMun_d/sub-0051352/mri/thalamus_sub-0051352_T1w.nii.gz

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MaxMun_d/sub-0051352/mri/wj_sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vf/gg/MD5E-s5634844--09ea640100415b05b000c03ac3d35eb5.nii.gz/MD5E-s5634844--09ea640100415b05b000c03ac3d35eb5.nii.gz

MaxMun_d/sub-0051352/mri/wmisub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZQ/0m/MD5E-s1214597--f6b1337d61944776176054c84704088c.nii.gz/MD5E-s1214597--f6b1337d61944776176054c84704088c.nii.gz

MaxMun_d/sub-0051352/mri/wmsub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/69/9M/MD5E-s1219234--7a33480b1c78d362ae06f87374a6a38f.nii.gz/MD5E-s1219234--7a33480b1c78d362ae06f87374a6a38f.nii.gz

MaxMun_d/sub-0051352/mri/wp0sub-0051352_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f0/7g/MD5E-s519075--8083ee02c589138eb0cdd9587feefe69.nii.gz/MD5E-s519075--8083ee02c589138eb0cdd9587feefe69.nii.gz

MaxMun_d/sub-0051352/mri/wp1sub-0051352_T1w.nii.gz

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MaxMun_d/sub-0051352/report/catlog_sub-0051352_T1w.nii.txt

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