[DATALAD RUNCMD] Compute USM/sub-0050489

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050489/anat/sub-0050489_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050489"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050489/label/catROI_sub-0050489_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/q4/Q8/MD5E-s61542--2fdcf0ddc2d3afcb944d934b4ebc041c.mat/MD5E-s61542--2fdcf0ddc2d3afcb944d934b4ebc041c.mat

USM/sub-0050489/label/catROI_sub-0050489_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/36/g2/MD5E-s188593--207a5d8cf0e39d5928c4332f76972d9d.xml/MD5E-s188593--207a5d8cf0e39d5928c4332f76972d9d.xml

USM/sub-0050489/label/catROIs_sub-0050489_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wm/17/MD5E-s120077--1773313fd81054e8cb01688b83a9caa1.mat/MD5E-s120077--1773313fd81054e8cb01688b83a9caa1.mat

USM/sub-0050489/label/catROIs_sub-0050489_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/47/pv/MD5E-s332108--a73e75da28248bc2a3a1d1535b7e03af.xml/MD5E-s332108--a73e75da28248bc2a3a1d1535b7e03af.xml

USM/sub-0050489/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050489_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050489/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050489_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1G/fv/MD5E-s482888--87a05aa5a6707bf70e0bd27bfc223b5f.nii.gz/MD5E-s482888--87a05aa5a6707bf70e0bd27bfc223b5f.nii.gz

USM/sub-0050489/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050489_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050489/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050489_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pF/gf/MD5E-s536757--e33954fb5f0cbc6ffb622dfaece45ecd.nii.gz/MD5E-s536757--e33954fb5f0cbc6ffb622dfaece45ecd.nii.gz

USM/sub-0050489/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050489_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050489/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050489_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2v/MV/MD5E-s767705--6c15fa1bdff7c6c773d9c1411215a5d7.nii.gz/MD5E-s767705--6c15fa1bdff7c6c773d9c1411215a5d7.nii.gz

USM/sub-0050489/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050489_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050489/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050489_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fj/X8/MD5E-s844365--4f67e4c055b660739dfbaa57d9880bae.nii.gz/MD5E-s844365--4f67e4c055b660739dfbaa57d9880bae.nii.gz

USM/sub-0050489/mri/Tian_Subcortex_S2_7T_sub-0050489_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050489/mri/Tian_Subcortex_S2_7T_sub-0050489_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jw/7W/MD5E-s76080--cd8389e70efa2667ec72405cf7e166d1.nii.gz/MD5E-s76080--cd8389e70efa2667ec72405cf7e166d1.nii.gz

USM/sub-0050489/mri/aal3_sub-0050489_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050489/mri/aal3_sub-0050489_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vK/8j/MD5E-s547101--7dd08e6266601ed07dbda5e56c6adf2c.nii.gz/MD5E-s547101--7dd08e6266601ed07dbda5e56c6adf2c.nii.gz

USM/sub-0050489/mri/anatomy3_sub-0050489_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050489/mri/anatomy3_sub-0050489_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J2/Xf/MD5E-s398727--6c547c6eb8d9041623d0000dc4ade215.nii.gz/MD5E-s398727--6c547c6eb8d9041623d0000dc4ade215.nii.gz

USM/sub-0050489/mri/anon_misub-0050489_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V2/55/MD5E-s23269231--78b1e30b8ec5bb6c8fd9a08fc64968a4.nii.gz/MD5E-s23269231--78b1e30b8ec5bb6c8fd9a08fc64968a4.nii.gz

USM/sub-0050489/mri/anon_msub-0050489_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fj/7W/MD5E-s39718379--f55fb7ffc8d2a00b1f0987b7f9e48ae6.nii.gz/MD5E-s39718379--f55fb7ffc8d2a00b1f0987b7f9e48ae6.nii.gz

USM/sub-0050489/mri/cat_sub-0050489_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/QZ/8k/MD5E-s303063--3e6ecdfe603d8ed602db7517c4576873.nii.gz/MD5E-s303063--3e6ecdfe603d8ed602db7517c4576873.nii.gz

USM/sub-0050489/mri/cobra_sub-0050489_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050489/mri/cobra_sub-0050489_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vf/V8/MD5E-s145432--4739b49bf6c9bad15c3c44a3b3a4b283.nii.gz/MD5E-s145432--4739b49bf6c9bad15c3c44a3b3a4b283.nii.gz

USM/sub-0050489/mri/hammers_sub-0050489_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050489/mri/hammers_sub-0050489_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0G/gg/MD5E-s426810--7297f37e43c0284d381d904f8cef1658.nii.gz/MD5E-s426810--7297f37e43c0284d381d904f8cef1658.nii.gz

USM/sub-0050489/mri/ibsr_sub-0050489_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050489/mri/ibsr_sub-0050489_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z2/6G/MD5E-s461269--21ece5832e71a88711e699d5f499f36d.nii.gz/MD5E-s461269--21ece5832e71a88711e699d5f499f36d.nii.gz

USM/sub-0050489/mri/it_sub-0050489_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/7Z/Xq/MD5E-s283--12fa6dc0148c6660dc422c0f6c09f249.mat/MD5E-s283--12fa6dc0148c6660dc422c0f6c09f249.mat

USM/sub-0050489/mri/it_sub-0050489_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fk/X6/MD5E-s284--3c2121a5b0773b66967c626ad8895b0c.mat/MD5E-s284--3c2121a5b0773b66967c626ad8895b0c.mat

USM/sub-0050489/mri/iy_sub-0050489_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w6/4m/MD5E-s197191713--0e026539335eaf8784f2a22e905e5b9b.nii.gz/MD5E-s197191713--0e026539335eaf8784f2a22e905e5b9b.nii.gz

USM/sub-0050489/mri/julichbrain_sub-0050489_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050489/mri/julichbrain_sub-0050489_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Ww/V7/MD5E-s571066--5935695291bcc0bfc3a2ef9960b9e0f9.nii.gz/MD5E-s571066--5935695291bcc0bfc3a2ef9960b9e0f9.nii.gz

USM/sub-0050489/mri/lpba40_sub-0050489_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050489/mri/lpba40_sub-0050489_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050489/mri/m0wp1sub-0050489_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050489/mri/m0wp2sub-0050489_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050489/mri/m0wp3sub-0050489_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050489/mri/mori_sub-0050489_T1w.csv

@@ -0,0 +1 @@
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USM/sub-0050489/mri/mori_sub-0050489_T1w.nii.gz

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USM/sub-0050489/mri/mwp1sub-0050489_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050489/mri/mwp2sub-0050489_T1w.nii.gz

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USM/sub-0050489/mri/mwp3sub-0050489_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050489/mri/neuromorphometrics_sub-0050489_T1w.csv

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USM/sub-0050489/mri/neuromorphometrics_sub-0050489_T1w.nii.gz

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USM/sub-0050489/mri/p0sub-0050489_T1w.nii.gz

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USM/sub-0050489/mri/p1sub-0050489_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050489/mri/p2sub-0050489_T1w.nii.gz

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USM/sub-0050489/mri/p3sub-0050489_T1w.nii.gz

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USM/sub-0050489/mri/rp1sub-0050489_T1w_affine.nii.gz

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USM/sub-0050489/mri/rp2sub-0050489_T1w_affine.nii.gz

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USM/sub-0050489/mri/rp3sub-0050489_T1w_affine.nii.gz

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USM/sub-0050489/mri/t_sub-0050489_T1w_affine_reorient.mat

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USM/sub-0050489/mri/t_sub-0050489_T1w_rigid_reorient.mat

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USM/sub-0050489/mri/thalamus_sub-0050489_T1w.csv

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USM/sub-0050489/mri/thalamus_sub-0050489_T1w.nii.gz

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USM/sub-0050489/mri/wj_sub-0050489_T1w.nii.gz

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USM/sub-0050489/mri/wmisub-0050489_T1w.nii.gz

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USM/sub-0050489/mri/wmsub-0050489_T1w.nii.gz

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USM/sub-0050489/mri/wp0sub-0050489_T1w.nii.gz

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USM/sub-0050489/mri/wp1sub-0050489_T1w.nii.gz

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USM/sub-0050489/mri/wp2sub-0050489_T1w.nii.gz

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USM/sub-0050489/mri/wp3sub-0050489_T1w.nii.gz

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