[DATALAD RUNCMD] Compute KKI/sub-0050822

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/KKI/sub-0050822/anat/sub-0050822_T1w.nii.gz"
 ],
 "outputs": [
  "KKI/sub-0050822"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

KKI/sub-0050822/label/catROI_sub-0050822_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/q8/Qp/MD5E-s61281--23fd104cf54b8cdd218ac3886a005e0b.mat/MD5E-s61281--23fd104cf54b8cdd218ac3886a005e0b.mat

KKI/sub-0050822/label/catROI_sub-0050822_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/wf/G0/MD5E-s188875--0ddc8224f0d7e4b53c9e8e6f3028fb30.xml/MD5E-s188875--0ddc8224f0d7e4b53c9e8e6f3028fb30.xml

KKI/sub-0050822/label/catROIs_sub-0050822_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/zg/03/MD5E-s120076--f12bede5ea3deae3adfd0d75deeae979.mat/MD5E-s120076--f12bede5ea3deae3adfd0d75deeae979.mat

KKI/sub-0050822/label/catROIs_sub-0050822_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/74/9Q/MD5E-s332119--bed090aff890ac90a6bc155efc9506c8.xml/MD5E-s332119--bed090aff890ac90a6bc155efc9506c8.xml

KKI/sub-0050822/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050822_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

KKI/sub-0050822/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050822_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1Q/2q/MD5E-s185598--541f937fd74e7e09b9fba54700fda940.nii.gz/MD5E-s185598--541f937fd74e7e09b9fba54700fda940.nii.gz

KKI/sub-0050822/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050822_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

KKI/sub-0050822/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050822_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qX/jv/MD5E-s207824--c5a50bf2459e27e5ce9145a02d3efaed.nii.gz/MD5E-s207824--c5a50bf2459e27e5ce9145a02d3efaed.nii.gz

KKI/sub-0050822/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050822_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

KKI/sub-0050822/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050822_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gP/1z/MD5E-s265475--d401aa0df01f397a7ab29e22aa52b559.nii.gz/MD5E-s265475--d401aa0df01f397a7ab29e22aa52b559.nii.gz

KKI/sub-0050822/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050822_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

KKI/sub-0050822/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050822_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8J/2P/MD5E-s295413--eb04fdfe955f3b2cf4d64808de3fe864.nii.gz/MD5E-s295413--eb04fdfe955f3b2cf4d64808de3fe864.nii.gz

KKI/sub-0050822/mri/Tian_Subcortex_S2_7T_sub-0050822_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

KKI/sub-0050822/mri/Tian_Subcortex_S2_7T_sub-0050822_T1w.nii.gz

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+../../../.git/annex/objects/fg/gF/MD5E-s26200--20e660c4e424be06e78431251341347e.nii.gz/MD5E-s26200--20e660c4e424be06e78431251341347e.nii.gz

KKI/sub-0050822/mri/aal3_sub-0050822_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

KKI/sub-0050822/mri/aal3_sub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/anatomy3_sub-0050822_T1w.csv

@@ -0,0 +1 @@
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KKI/sub-0050822/mri/anatomy3_sub-0050822_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F6/J1/MD5E-s149126--72da4a476c8cfa58c4a9ffc81adfe6e0.nii.gz/MD5E-s149126--72da4a476c8cfa58c4a9ffc81adfe6e0.nii.gz

KKI/sub-0050822/mri/anon_misub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/anon_msub-0050822_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j1/78/MD5E-s11942876--a410cbfa33593b89ea47376823cdc687.nii.gz/MD5E-s11942876--a410cbfa33593b89ea47376823cdc687.nii.gz

KKI/sub-0050822/mri/cat_sub-0050822_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050822/mri/cobra_sub-0050822_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

KKI/sub-0050822/mri/cobra_sub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/hammers_sub-0050822_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

KKI/sub-0050822/mri/hammers_sub-0050822_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050822/mri/ibsr_sub-0050822_T1w.csv

@@ -0,0 +1 @@
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KKI/sub-0050822/mri/ibsr_sub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/it_sub-0050822_T1w_affine_reorient.mat

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KKI/sub-0050822/mri/it_sub-0050822_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/2v/WV/MD5E-s282--c19ce2614f1fe44badec838b329e01cf.mat/MD5E-s282--c19ce2614f1fe44badec838b329e01cf.mat

KKI/sub-0050822/mri/iy_sub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/julichbrain_sub-0050822_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

KKI/sub-0050822/mri/julichbrain_sub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/lpba40_sub-0050822_T1w.csv

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+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

KKI/sub-0050822/mri/lpba40_sub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/m0wp1sub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/m0wp2sub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/m0wp3sub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/mori_sub-0050822_T1w.csv

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KKI/sub-0050822/mri/mori_sub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/mwp1sub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/mwp2sub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/mwp3sub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/neuromorphometrics_sub-0050822_T1w.csv

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KKI/sub-0050822/mri/neuromorphometrics_sub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/p0sub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/p1sub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/p2sub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/p3sub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/rp1sub-0050822_T1w_affine.nii.gz

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KKI/sub-0050822/mri/rp2sub-0050822_T1w_affine.nii.gz

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KKI/sub-0050822/mri/rp3sub-0050822_T1w_affine.nii.gz

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KKI/sub-0050822/mri/t_sub-0050822_T1w_affine_reorient.mat

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KKI/sub-0050822/mri/t_sub-0050822_T1w_rigid_reorient.mat

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KKI/sub-0050822/mri/thalamus_sub-0050822_T1w.csv

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KKI/sub-0050822/mri/thalamus_sub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/wj_sub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/wmisub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/wmsub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/wp0sub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/wp1sub-0050822_T1w.nii.gz

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KKI/sub-0050822/mri/wp2sub-0050822_T1w.nii.gz

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