[DATALAD RUNCMD] Compute UM_1/sub-0050380

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050380/anat/sub-0050380_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050380"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050380/label/catROI_sub-0050380_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/X2/xk/MD5E-s61344--41cfe0096feeb88d74358fc07ffb577d.mat/MD5E-s61344--41cfe0096feeb88d74358fc07ffb577d.mat

UM_1/sub-0050380/label/catROI_sub-0050380_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/0w/4v/MD5E-s188759--5110b580f1adfb39030ea08622ceb6fe.xml/MD5E-s188759--5110b580f1adfb39030ea08622ceb6fe.xml

UM_1/sub-0050380/label/catROIs_sub-0050380_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/XF/w4/MD5E-s120091--9e5aec6f9c96cb22e6f9574a63703d8f.mat/MD5E-s120091--9e5aec6f9c96cb22e6f9574a63703d8f.mat

UM_1/sub-0050380/label/catROIs_sub-0050380_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/PP/qq/MD5E-s332039--32f9682e03a1ab322af0fbf39efcbaa0.xml/MD5E-s332039--32f9682e03a1ab322af0fbf39efcbaa0.xml

UM_1/sub-0050380/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050380_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050380/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050380_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zq/ZF/MD5E-s167117--b0dc987d6d9b26cb8a1d01fc2ae87ced.nii.gz/MD5E-s167117--b0dc987d6d9b26cb8a1d01fc2ae87ced.nii.gz

UM_1/sub-0050380/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050380_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050380/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050380_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8f/gg/MD5E-s187727--a99e2c09377f9135b6acf3807422645a.nii.gz/MD5E-s187727--a99e2c09377f9135b6acf3807422645a.nii.gz

UM_1/sub-0050380/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050380_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050380/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050380_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050380/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050380_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050380/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050380_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z8/24/MD5E-s262306--b1d90d13bb099833b38c950723021f65.nii.gz/MD5E-s262306--b1d90d13bb099833b38c950723021f65.nii.gz

UM_1/sub-0050380/mri/Tian_Subcortex_S2_7T_sub-0050380_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050380/mri/Tian_Subcortex_S2_7T_sub-0050380_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0p/XX/MD5E-s20437--efae4524cefc4936ce28925a19e4a3c3.nii.gz/MD5E-s20437--efae4524cefc4936ce28925a19e4a3c3.nii.gz

UM_1/sub-0050380/mri/aal3_sub-0050380_T1w.csv

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UM_1/sub-0050380/mri/aal3_sub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/anatomy3_sub-0050380_T1w.csv

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UM_1/sub-0050380/mri/anatomy3_sub-0050380_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050380/mri/anon_misub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/anon_msub-0050380_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/v0/23/MD5E-s7853616--37934072da0c03756cb00004dc64d0a4.nii.gz/MD5E-s7853616--37934072da0c03756cb00004dc64d0a4.nii.gz

UM_1/sub-0050380/mri/cat_sub-0050380_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050380/mri/cobra_sub-0050380_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050380/mri/cobra_sub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/hammers_sub-0050380_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050380/mri/hammers_sub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/ibsr_sub-0050380_T1w.csv

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UM_1/sub-0050380/mri/ibsr_sub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/it_sub-0050380_T1w_affine_reorient.mat

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UM_1/sub-0050380/mri/it_sub-0050380_T1w_rigid_reorient.mat

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+../../../.git/annex/objects/Px/g8/MD5E-s284--4085fa4ba36e370ec0e5f97b0b7e9c82.mat/MD5E-s284--4085fa4ba36e370ec0e5f97b0b7e9c82.mat

UM_1/sub-0050380/mri/iy_sub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/julichbrain_sub-0050380_T1w.csv

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UM_1/sub-0050380/mri/julichbrain_sub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/lpba40_sub-0050380_T1w.csv

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UM_1/sub-0050380/mri/lpba40_sub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/m0wp1sub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/m0wp2sub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/m0wp3sub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/mori_sub-0050380_T1w.csv

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UM_1/sub-0050380/mri/mori_sub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/mwp1sub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/mwp2sub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/mwp3sub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/neuromorphometrics_sub-0050380_T1w.csv

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UM_1/sub-0050380/mri/neuromorphometrics_sub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/p0sub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/p1sub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/p2sub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/p3sub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/rp1sub-0050380_T1w_affine.nii.gz

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UM_1/sub-0050380/mri/rp2sub-0050380_T1w_affine.nii.gz

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UM_1/sub-0050380/mri/rp3sub-0050380_T1w_affine.nii.gz

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UM_1/sub-0050380/mri/t_sub-0050380_T1w_affine_reorient.mat

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UM_1/sub-0050380/mri/t_sub-0050380_T1w_rigid_reorient.mat

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UM_1/sub-0050380/mri/thalamus_sub-0050380_T1w.csv

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UM_1/sub-0050380/mri/thalamus_sub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/wj_sub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/wmisub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/wp0sub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/wp1sub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/wp2sub-0050380_T1w.nii.gz

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UM_1/sub-0050380/mri/wp3sub-0050380_T1w.nii.gz

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