[DATALAD RUNCMD] Compute NYU/sub-0051153

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/NYU/sub-0051153/anat/sub-0051153_T1w.nii.gz"
 ],
 "outputs": [
  "NYU/sub-0051153"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU/sub-0051153/label/catROI_sub-0051153_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/qX/zx/MD5E-s57980--cd1a9760ec365b323daf7f64a031499a.mat/MD5E-s57980--cd1a9760ec365b323daf7f64a031499a.mat

NYU/sub-0051153/label/catROI_sub-0051153_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/M7/5W/MD5E-s188674--eb5c2c0c88793936b71b119c188bd008.xml/MD5E-s188674--eb5c2c0c88793936b71b119c188bd008.xml

NYU/sub-0051153/label/catROIs_sub-0051153_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/2X/Kv/MD5E-s120263--72a925237b6fd0d08be0189b63feb5d2.mat/MD5E-s120263--72a925237b6fd0d08be0189b63feb5d2.mat

NYU/sub-0051153/label/catROIs_sub-0051153_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/g4/3k/MD5E-s332075--e753e5c67587e452588b793d68c94e1d.xml/MD5E-s332075--e753e5c67587e452588b793d68c94e1d.xml

NYU/sub-0051153/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051153_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU/sub-0051153/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/QM/0x/MD5E-s154852--2fbee639eb63293ef0dab2ab0ae9efb4.nii.gz/MD5E-s154852--2fbee639eb63293ef0dab2ab0ae9efb4.nii.gz

NYU/sub-0051153/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051153_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU/sub-0051153/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gg/1K/MD5E-s172152--beebc14bcb5706b84c7cb4d23cb46b7e.nii.gz/MD5E-s172152--beebc14bcb5706b84c7cb4d23cb46b7e.nii.gz

NYU/sub-0051153/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051153_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU/sub-0051153/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051153_T1w.nii.gz

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+../../../.git/annex/objects/Gx/VW/MD5E-s231624--69a2bed53391d94cfac4b183a4d073b6.nii.gz/MD5E-s231624--69a2bed53391d94cfac4b183a4d073b6.nii.gz

NYU/sub-0051153/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051153_T1w.csv

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+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU/sub-0051153/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051153_T1w.nii.gz

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+../../../.git/annex/objects/w2/Qf/MD5E-s257190--e95ab07f1a774cd7333cbdd5bc6fb070.nii.gz/MD5E-s257190--e95ab07f1a774cd7333cbdd5bc6fb070.nii.gz

NYU/sub-0051153/mri/Tian_Subcortex_S2_7T_sub-0051153_T1w.csv

@@ -0,0 +1 @@
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NYU/sub-0051153/mri/Tian_Subcortex_S2_7T_sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/aal3_sub-0051153_T1w.csv

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NYU/sub-0051153/mri/aal3_sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/anatomy3_sub-0051153_T1w.csv

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NYU/sub-0051153/mri/anatomy3_sub-0051153_T1w.nii.gz

@@ -0,0 +1 @@
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NYU/sub-0051153/mri/anon_misub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/anon_msub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/cat_sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/cobra_sub-0051153_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU/sub-0051153/mri/cobra_sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/hammers_sub-0051153_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU/sub-0051153/mri/hammers_sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/ibsr_sub-0051153_T1w.csv

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NYU/sub-0051153/mri/ibsr_sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/it_sub-0051153_T1w_affine_reorient.mat

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+../../../.git/annex/objects/g9/X9/MD5E-s282--ea00e4404ae5b95b1aea9cf647067f7d.mat/MD5E-s282--ea00e4404ae5b95b1aea9cf647067f7d.mat

NYU/sub-0051153/mri/it_sub-0051153_T1w_rigid_reorient.mat

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NYU/sub-0051153/mri/iy_sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/julichbrain_sub-0051153_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU/sub-0051153/mri/julichbrain_sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/lpba40_sub-0051153_T1w.csv

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NYU/sub-0051153/mri/lpba40_sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/m0wp1sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/m0wp2sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/m0wp3sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/mori_sub-0051153_T1w.csv

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NYU/sub-0051153/mri/mori_sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/mwp1sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/mwp2sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/mwp3sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/neuromorphometrics_sub-0051153_T1w.csv

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NYU/sub-0051153/mri/neuromorphometrics_sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/p0sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/p1sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/p2sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/p3sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/rp1sub-0051153_T1w_affine.nii.gz

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NYU/sub-0051153/mri/rp2sub-0051153_T1w_affine.nii.gz

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NYU/sub-0051153/mri/rp3sub-0051153_T1w_affine.nii.gz

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NYU/sub-0051153/mri/t_sub-0051153_T1w_affine_reorient.mat

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NYU/sub-0051153/mri/t_sub-0051153_T1w_rigid_reorient.mat

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NYU/sub-0051153/mri/thalamus_sub-0051153_T1w.csv

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NYU/sub-0051153/mri/thalamus_sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/wj_sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/wmisub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/wmsub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/wp0sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/wp1sub-0051153_T1w.nii.gz

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NYU/sub-0051153/mri/wp2sub-0051153_T1w.nii.gz

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