[DATALAD RUNCMD] Compute Yale/sub-0050559

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Yale/sub-0050559/anat/sub-0050559_T1w.nii.gz"
 ],
 "outputs": [
  "Yale/sub-0050559"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Yale/sub-0050559/label/catROI_sub-0050559_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vp/Jg/MD5E-s57787--7673e8ddfaf7ea583efff3de57dacd20.mat/MD5E-s57787--7673e8ddfaf7ea583efff3de57dacd20.mat

Yale/sub-0050559/label/catROI_sub-0050559_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/66/Jf/MD5E-s188767--07fccd9fe286ef1554d6df09117d2e2d.xml/MD5E-s188767--07fccd9fe286ef1554d6df09117d2e2d.xml

Yale/sub-0050559/label/catROIs_sub-0050559_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/fv/30/MD5E-s120079--63992d5156f8391385df428bc6376632.mat/MD5E-s120079--63992d5156f8391385df428bc6376632.mat

Yale/sub-0050559/label/catROIs_sub-0050559_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/2P/83/MD5E-s332014--4a1edfb4c0dea9713cb9b3d428872af8.xml/MD5E-s332014--4a1edfb4c0dea9713cb9b3d428872af8.xml

Yale/sub-0050559/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050559_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Yale/sub-0050559/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050559_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K7/qx/MD5E-s172130--bf35c949d343e17d658510597183d0a3.nii.gz/MD5E-s172130--bf35c949d343e17d658510597183d0a3.nii.gz

Yale/sub-0050559/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050559_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Yale/sub-0050559/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050559_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vx/91/MD5E-s192915--ebd71402d02cadf6820db4e606dea731.nii.gz/MD5E-s192915--ebd71402d02cadf6820db4e606dea731.nii.gz

Yale/sub-0050559/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050559_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Yale/sub-0050559/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050559_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/91/1Q/MD5E-s262519--32baac2fe8556a80a0e36dea68012905.nii.gz/MD5E-s262519--32baac2fe8556a80a0e36dea68012905.nii.gz

Yale/sub-0050559/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050559_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Yale/sub-0050559/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050559_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k5/6f/MD5E-s291794--2250620eb45a56e09243a4e50c14f9a0.nii.gz/MD5E-s291794--2250620eb45a56e09243a4e50c14f9a0.nii.gz

Yale/sub-0050559/mri/Tian_Subcortex_S2_7T_sub-0050559_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Yale/sub-0050559/mri/Tian_Subcortex_S2_7T_sub-0050559_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PP/6x/MD5E-s24885--d3425d0ea7f485f919dc3dfa9d8a6b11.nii.gz/MD5E-s24885--d3425d0ea7f485f919dc3dfa9d8a6b11.nii.gz

Yale/sub-0050559/mri/aal3_sub-0050559_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Yale/sub-0050559/mri/aal3_sub-0050559_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j2/0m/MD5E-s195529--33297964c976d68a8d008a74b1a2d4bf.nii.gz/MD5E-s195529--33297964c976d68a8d008a74b1a2d4bf.nii.gz

Yale/sub-0050559/mri/anatomy3_sub-0050559_T1w.csv

@@ -0,0 +1 @@
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Yale/sub-0050559/mri/anatomy3_sub-0050559_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/QJ/JP/MD5E-s141118--40d16ab27c9f284a1d4066fc83621fbc.nii.gz/MD5E-s141118--40d16ab27c9f284a1d4066fc83621fbc.nii.gz

Yale/sub-0050559/mri/anon_misub-0050559_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FM/F9/MD5E-s4499595--27bdcc04cb8155e5974856587d77e64a.nii.gz/MD5E-s4499595--27bdcc04cb8155e5974856587d77e64a.nii.gz

Yale/sub-0050559/mri/anon_msub-0050559_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/78/KX/MD5E-s9818085--550b8a0dddfd3f8fac117a2ae373a6e4.nii.gz/MD5E-s9818085--550b8a0dddfd3f8fac117a2ae373a6e4.nii.gz

Yale/sub-0050559/mri/cat_sub-0050559_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/m4/17/MD5E-s98205--38733b076d19ae852ef17f4ebd0dadf1.nii.gz/MD5E-s98205--38733b076d19ae852ef17f4ebd0dadf1.nii.gz

Yale/sub-0050559/mri/cobra_sub-0050559_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Yale/sub-0050559/mri/cobra_sub-0050559_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2W/PF/MD5E-s50407--43a7074a955400ddb65d8ec2863e7df9.nii.gz/MD5E-s50407--43a7074a955400ddb65d8ec2863e7df9.nii.gz

Yale/sub-0050559/mri/hammers_sub-0050559_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Yale/sub-0050559/mri/hammers_sub-0050559_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q6/9Z/MD5E-s152438--3ef34e6b1c51c67e3c0276d2c8a09a8c.nii.gz/MD5E-s152438--3ef34e6b1c51c67e3c0276d2c8a09a8c.nii.gz

Yale/sub-0050559/mri/ibsr_sub-0050559_T1w.csv

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+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Yale/sub-0050559/mri/ibsr_sub-0050559_T1w.nii.gz

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+../../../.git/annex/objects/1F/68/MD5E-s161033--c0407862fbfee1757d7255cdbf159c1e.nii.gz/MD5E-s161033--c0407862fbfee1757d7255cdbf159c1e.nii.gz

Yale/sub-0050559/mri/it_sub-0050559_T1w_affine_reorient.mat

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+../../../.git/annex/objects/xK/fg/MD5E-s284--328a5f8dad1bbc676e9b050104d2fb5a.mat/MD5E-s284--328a5f8dad1bbc676e9b050104d2fb5a.mat

Yale/sub-0050559/mri/it_sub-0050559_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/fk/Vk/MD5E-s284--2d9cb3a91a2540a7d4a5aea02ce9e293.mat/MD5E-s284--2d9cb3a91a2540a7d4a5aea02ce9e293.mat

Yale/sub-0050559/mri/iy_sub-0050559_T1w.nii.gz

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Yale/sub-0050559/mri/julichbrain_sub-0050559_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Yale/sub-0050559/mri/julichbrain_sub-0050559_T1w.nii.gz

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Yale/sub-0050559/mri/lpba40_sub-0050559_T1w.csv

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+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Yale/sub-0050559/mri/lpba40_sub-0050559_T1w.nii.gz

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Yale/sub-0050559/mri/m0wp1sub-0050559_T1w.nii.gz

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+../../../.git/annex/objects/9J/Z9/MD5E-s2610484--2aecb12fae9bd0905a014218e4832046.nii.gz/MD5E-s2610484--2aecb12fae9bd0905a014218e4832046.nii.gz

Yale/sub-0050559/mri/m0wp2sub-0050559_T1w.nii.gz

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Yale/sub-0050559/mri/m0wp3sub-0050559_T1w.nii.gz

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Yale/sub-0050559/mri/mori_sub-0050559_T1w.csv

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Yale/sub-0050559/mri/mori_sub-0050559_T1w.nii.gz

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Yale/sub-0050559/mri/mwp1sub-0050559_T1w.nii.gz

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Yale/sub-0050559/mri/mwp2sub-0050559_T1w.nii.gz

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Yale/sub-0050559/mri/mwp3sub-0050559_T1w.nii.gz

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Yale/sub-0050559/mri/neuromorphometrics_sub-0050559_T1w.csv

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Yale/sub-0050559/mri/neuromorphometrics_sub-0050559_T1w.nii.gz

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Yale/sub-0050559/mri/p0sub-0050559_T1w.nii.gz

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Yale/sub-0050559/mri/p1sub-0050559_T1w.nii.gz

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Yale/sub-0050559/mri/p2sub-0050559_T1w.nii.gz

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Yale/sub-0050559/mri/p3sub-0050559_T1w.nii.gz

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Yale/sub-0050559/mri/rp1sub-0050559_T1w_affine.nii.gz

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Yale/sub-0050559/mri/rp2sub-0050559_T1w_affine.nii.gz

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Yale/sub-0050559/mri/rp3sub-0050559_T1w_affine.nii.gz

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Yale/sub-0050559/mri/t_sub-0050559_T1w_affine_reorient.mat

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Yale/sub-0050559/mri/t_sub-0050559_T1w_rigid_reorient.mat

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Yale/sub-0050559/mri/thalamus_sub-0050559_T1w.csv

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Yale/sub-0050559/mri/thalamus_sub-0050559_T1w.nii.gz

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Yale/sub-0050559/mri/wj_sub-0050559_T1w.nii.gz

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Yale/sub-0050559/mri/wmisub-0050559_T1w.nii.gz

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Yale/sub-0050559/mri/wmsub-0050559_T1w.nii.gz

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Yale/sub-0050559/mri/wp0sub-0050559_T1w.nii.gz

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Yale/sub-0050559/mri/wp1sub-0050559_T1w.nii.gz

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Yale/sub-0050559/mri/wp2sub-0050559_T1w.nii.gz

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Yale/sub-0050559/mri/wp3sub-0050559_T1w.nii.gz

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