[DATALAD RUNCMD] Compute Yale/sub-0050552

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Yale/sub-0050552/anat/sub-0050552_T1w.nii.gz"
 ],
 "outputs": [
  "Yale/sub-0050552"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Yale/sub-0050552/label/catROI_sub-0050552_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/8P/PM/MD5E-s57804--2cfc08708bb77296b2b28a954848cc59.mat/MD5E-s57804--2cfc08708bb77296b2b28a954848cc59.mat

Yale/sub-0050552/label/catROI_sub-0050552_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z1/4m/MD5E-s188731--5c5feb141c0d2ce074f663591d123b94.xml/MD5E-s188731--5c5feb141c0d2ce074f663591d123b94.xml

Yale/sub-0050552/label/catROIs_sub-0050552_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/46/8Z/MD5E-s119961--f07f9fdd6041a9a4cfbc7cb636eeb988.mat/MD5E-s119961--f07f9fdd6041a9a4cfbc7cb636eeb988.mat

Yale/sub-0050552/label/catROIs_sub-0050552_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/mz/Z8/MD5E-s331723--377c16de1537d932f21f98300c8ee935.xml/MD5E-s331723--377c16de1537d932f21f98300c8ee935.xml

Yale/sub-0050552/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050552_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Yale/sub-0050552/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050552_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2x/9q/MD5E-s175471--817c3607cd6c139b01d5227e83d8e6f1.nii.gz/MD5E-s175471--817c3607cd6c139b01d5227e83d8e6f1.nii.gz

Yale/sub-0050552/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050552_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Yale/sub-0050552/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050552_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6j/9z/MD5E-s196076--ed82e10d9986cd6aff9afe95f343df7b.nii.gz/MD5E-s196076--ed82e10d9986cd6aff9afe95f343df7b.nii.gz

Yale/sub-0050552/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050552_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Yale/sub-0050552/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050552_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X7/kJ/MD5E-s265489--e8c2c3e1b7d585276c30842dfd071d5b.nii.gz/MD5E-s265489--e8c2c3e1b7d585276c30842dfd071d5b.nii.gz

Yale/sub-0050552/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050552_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Yale/sub-0050552/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050552_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gv/5Q/MD5E-s293754--64089ad41106ec9eca48fca01e2859c5.nii.gz/MD5E-s293754--64089ad41106ec9eca48fca01e2859c5.nii.gz

Yale/sub-0050552/mri/Tian_Subcortex_S2_7T_sub-0050552_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Yale/sub-0050552/mri/Tian_Subcortex_S2_7T_sub-0050552_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wp/XW/MD5E-s24377--37a86451306fda2645315a6c38fad486.nii.gz/MD5E-s24377--37a86451306fda2645315a6c38fad486.nii.gz

Yale/sub-0050552/mri/aal3_sub-0050552_T1w.csv

@@ -0,0 +1 @@
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Yale/sub-0050552/mri/aal3_sub-0050552_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1q/8M/MD5E-s197529--7e20e0b32bfa19f2f3fd268a62b2349d.nii.gz/MD5E-s197529--7e20e0b32bfa19f2f3fd268a62b2349d.nii.gz

Yale/sub-0050552/mri/anatomy3_sub-0050552_T1w.csv

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Yale/sub-0050552/mri/anatomy3_sub-0050552_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q9/qp/MD5E-s142519--aed5d663f02998cc2b413ab7d63644be.nii.gz/MD5E-s142519--aed5d663f02998cc2b413ab7d63644be.nii.gz

Yale/sub-0050552/mri/anon_misub-0050552_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/71/pf/MD5E-s4829599--626acf220fe40a3ae172287fc4e59e99.nii.gz/MD5E-s4829599--626acf220fe40a3ae172287fc4e59e99.nii.gz

Yale/sub-0050552/mri/anon_msub-0050552_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KX/Pg/MD5E-s10985075--54393baa643589b407aad161db252c6a.nii.gz/MD5E-s10985075--54393baa643589b407aad161db252c6a.nii.gz

Yale/sub-0050552/mri/cat_sub-0050552_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KW/51/MD5E-s101770--ef03f74ee4ea27b5b3480b38084d0d18.nii.gz/MD5E-s101770--ef03f74ee4ea27b5b3480b38084d0d18.nii.gz

Yale/sub-0050552/mri/cobra_sub-0050552_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Yale/sub-0050552/mri/cobra_sub-0050552_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MK/6X/MD5E-s49507--77910e00272bb38c14e19bed6937e0b5.nii.gz/MD5E-s49507--77910e00272bb38c14e19bed6937e0b5.nii.gz

Yale/sub-0050552/mri/hammers_sub-0050552_T1w.csv

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+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Yale/sub-0050552/mri/hammers_sub-0050552_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jp/ww/MD5E-s154235--1efbc32271fcc3caf6a52c73f3c6a304.nii.gz/MD5E-s154235--1efbc32271fcc3caf6a52c73f3c6a304.nii.gz

Yale/sub-0050552/mri/ibsr_sub-0050552_T1w.csv

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Yale/sub-0050552/mri/ibsr_sub-0050552_T1w.nii.gz

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Yale/sub-0050552/mri/it_sub-0050552_T1w_affine_reorient.mat

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+../../../.git/annex/objects/vW/VQ/MD5E-s284--1de92fd85e0f8ab3e87072b8b46c0f6a.mat/MD5E-s284--1de92fd85e0f8ab3e87072b8b46c0f6a.mat

Yale/sub-0050552/mri/it_sub-0050552_T1w_rigid_reorient.mat

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+../../../.git/annex/objects/gG/pG/MD5E-s283--3aafd26a28348a2992c92861ce93a3e6.mat/MD5E-s283--3aafd26a28348a2992c92861ce93a3e6.mat

Yale/sub-0050552/mri/iy_sub-0050552_T1w.nii.gz

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Yale/sub-0050552/mri/julichbrain_sub-0050552_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Yale/sub-0050552/mri/julichbrain_sub-0050552_T1w.nii.gz

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Yale/sub-0050552/mri/lpba40_sub-0050552_T1w.csv

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+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Yale/sub-0050552/mri/lpba40_sub-0050552_T1w.nii.gz

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Yale/sub-0050552/mri/m0wp1sub-0050552_T1w.nii.gz

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Yale/sub-0050552/mri/m0wp2sub-0050552_T1w.nii.gz

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Yale/sub-0050552/mri/m0wp3sub-0050552_T1w.nii.gz

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Yale/sub-0050552/mri/mori_sub-0050552_T1w.csv

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Yale/sub-0050552/mri/mori_sub-0050552_T1w.nii.gz

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Yale/sub-0050552/mri/mwp1sub-0050552_T1w.nii.gz

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Yale/sub-0050552/mri/mwp2sub-0050552_T1w.nii.gz

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Yale/sub-0050552/mri/mwp3sub-0050552_T1w.nii.gz

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Yale/sub-0050552/mri/neuromorphometrics_sub-0050552_T1w.csv

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Yale/sub-0050552/mri/neuromorphometrics_sub-0050552_T1w.nii.gz

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Yale/sub-0050552/mri/p0sub-0050552_T1w.nii.gz

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Yale/sub-0050552/mri/p1sub-0050552_T1w.nii.gz

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Yale/sub-0050552/mri/p2sub-0050552_T1w.nii.gz

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Yale/sub-0050552/mri/p3sub-0050552_T1w.nii.gz

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Yale/sub-0050552/mri/rp1sub-0050552_T1w_affine.nii.gz

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Yale/sub-0050552/mri/rp2sub-0050552_T1w_affine.nii.gz

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Yale/sub-0050552/mri/rp3sub-0050552_T1w_affine.nii.gz

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Yale/sub-0050552/mri/t_sub-0050552_T1w_affine_reorient.mat

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Yale/sub-0050552/mri/t_sub-0050552_T1w_rigid_reorient.mat

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Yale/sub-0050552/mri/thalamus_sub-0050552_T1w.csv

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Yale/sub-0050552/mri/thalamus_sub-0050552_T1w.nii.gz

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Yale/sub-0050552/mri/wj_sub-0050552_T1w.nii.gz

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Yale/sub-0050552/mri/wmisub-0050552_T1w.nii.gz

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Yale/sub-0050552/mri/wmsub-0050552_T1w.nii.gz

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Yale/sub-0050552/mri/wp0sub-0050552_T1w.nii.gz

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Yale/sub-0050552/mri/wp1sub-0050552_T1w.nii.gz

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Yale/sub-0050552/mri/wp2sub-0050552_T1w.nii.gz

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Yale/sub-0050552/mri/wp3sub-0050552_T1w.nii.gz

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