[DATALAD RUNCMD] Compute UM_1/sub-0050370

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050370/anat/sub-0050370_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050370"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050370/label/catROI_sub-0050370_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/w5/w5/MD5E-s61283--fa11b54206b762dbde7d7c5592a235ac.mat/MD5E-s61283--fa11b54206b762dbde7d7c5592a235ac.mat

UM_1/sub-0050370/label/catROI_sub-0050370_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/2q/xM/MD5E-s188591--664a9dfe2065444a8d52f034f74f5c56.xml/MD5E-s188591--664a9dfe2065444a8d52f034f74f5c56.xml

UM_1/sub-0050370/label/catROIs_sub-0050370_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/23/V4/MD5E-s120142--5592571c03dd0abee5d8588334838d06.mat/MD5E-s120142--5592571c03dd0abee5d8588334838d06.mat

UM_1/sub-0050370/label/catROIs_sub-0050370_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/9z/K1/MD5E-s332089--c9deb0eb1daa15ad4cc4c1ff2c9472c9.xml/MD5E-s332089--c9deb0eb1daa15ad4cc4c1ff2c9472c9.xml

UM_1/sub-0050370/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050370_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050370/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050370_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0z/Zv/MD5E-s160981--25ad2cea45d6c485f88f34d93ac7773c.nii.gz/MD5E-s160981--25ad2cea45d6c485f88f34d93ac7773c.nii.gz

UM_1/sub-0050370/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050370_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_1/sub-0050370/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050370_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jv/2f/MD5E-s180951--de74ca440e53478944fef0abed224ac4.nii.gz/MD5E-s180951--de74ca440e53478944fef0abed224ac4.nii.gz

UM_1/sub-0050370/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050370_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050370/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050370_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J2/6K/MD5E-s227676--96d1511d64cd9033bb22fe4950b1c801.nii.gz/MD5E-s227676--96d1511d64cd9033bb22fe4950b1c801.nii.gz

UM_1/sub-0050370/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050370_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050370/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050370_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3x/Jk/MD5E-s253247--4231fbf2dbc46f3dd74e4c0148a09c2e.nii.gz/MD5E-s253247--4231fbf2dbc46f3dd74e4c0148a09c2e.nii.gz

UM_1/sub-0050370/mri/Tian_Subcortex_S2_7T_sub-0050370_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050370/mri/Tian_Subcortex_S2_7T_sub-0050370_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K7/vj/MD5E-s19254--ede6de837e52a6107d62dc58b8eaff61.nii.gz/MD5E-s19254--ede6de837e52a6107d62dc58b8eaff61.nii.gz

UM_1/sub-0050370/mri/aal3_sub-0050370_T1w.csv

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UM_1/sub-0050370/mri/aal3_sub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/anatomy3_sub-0050370_T1w.csv

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UM_1/sub-0050370/mri/anatomy3_sub-0050370_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M1/2J/MD5E-s129791--6df44d0682258f605c7e15a65aa0366b.nii.gz/MD5E-s129791--6df44d0682258f605c7e15a65aa0366b.nii.gz

UM_1/sub-0050370/mri/anon_misub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/anon_msub-0050370_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f1/GG/MD5E-s5316746--11a8303cce0e04802d5bda71cbaed6d3.nii.gz/MD5E-s5316746--11a8303cce0e04802d5bda71cbaed6d3.nii.gz

UM_1/sub-0050370/mri/cat_sub-0050370_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050370/mri/cobra_sub-0050370_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050370/mri/cobra_sub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/hammers_sub-0050370_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050370/mri/hammers_sub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/ibsr_sub-0050370_T1w.csv

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UM_1/sub-0050370/mri/ibsr_sub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/it_sub-0050370_T1w_affine_reorient.mat

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UM_1/sub-0050370/mri/it_sub-0050370_T1w_rigid_reorient.mat

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+../../../.git/annex/objects/pp/kG/MD5E-s284--581609977b7e63ddf9a335c2987262bc.mat/MD5E-s284--581609977b7e63ddf9a335c2987262bc.mat

UM_1/sub-0050370/mri/iy_sub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/julichbrain_sub-0050370_T1w.csv

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UM_1/sub-0050370/mri/julichbrain_sub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/lpba40_sub-0050370_T1w.csv

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UM_1/sub-0050370/mri/lpba40_sub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/m0wp1sub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/m0wp2sub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/m0wp3sub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/mori_sub-0050370_T1w.csv

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UM_1/sub-0050370/mri/mori_sub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/mwp1sub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/mwp2sub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/mwp3sub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/neuromorphometrics_sub-0050370_T1w.csv

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UM_1/sub-0050370/mri/neuromorphometrics_sub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/p0sub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/p1sub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/p2sub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/p3sub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/rp1sub-0050370_T1w_affine.nii.gz

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UM_1/sub-0050370/mri/rp2sub-0050370_T1w_affine.nii.gz

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UM_1/sub-0050370/mri/rp3sub-0050370_T1w_affine.nii.gz

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UM_1/sub-0050370/mri/t_sub-0050370_T1w_affine_reorient.mat

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UM_1/sub-0050370/mri/t_sub-0050370_T1w_rigid_reorient.mat

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UM_1/sub-0050370/mri/thalamus_sub-0050370_T1w.csv

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UM_1/sub-0050370/mri/thalamus_sub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/wj_sub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/wmisub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/wp0sub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/wp1sub-0050370_T1w.nii.gz

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UM_1/sub-0050370/mri/wp2sub-0050370_T1w.nii.gz

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