[DATALAD RUNCMD] Compute MaxMun_c/sub-0051336

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/MaxMun_c/sub-0051336/anat/sub-0051336_T1w.nii.gz"
 ],
 "outputs": [
  "MaxMun_c/sub-0051336"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MaxMun_c/sub-0051336/label/catROI_sub-0051336_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z8/wZ/MD5E-s58753--2d96b342c032d2d5dddb631bacba75cd.mat/MD5E-s58753--2d96b342c032d2d5dddb631bacba75cd.mat

MaxMun_c/sub-0051336/label/catROI_sub-0051336_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/JP/J5/MD5E-s188726--372893a2fb6dcc581fd20309951dc504.xml/MD5E-s188726--372893a2fb6dcc581fd20309951dc504.xml

MaxMun_c/sub-0051336/label/catROIs_sub-0051336_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/12/J5/MD5E-s120108--d4cb15bd027d27a877cedca49fe06158.mat/MD5E-s120108--d4cb15bd027d27a877cedca49fe06158.mat

MaxMun_c/sub-0051336/label/catROIs_sub-0051336_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/5g/km/MD5E-s332143--6a93d6290ed7f463346d32bcb947f2d0.xml/MD5E-s332143--6a93d6290ed7f463346d32bcb947f2d0.xml

MaxMun_c/sub-0051336/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051336_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MaxMun_c/sub-0051336/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051336_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kv/kj/MD5E-s181221--4404a41bad66264f807d55bd4b6967ab.nii.gz/MD5E-s181221--4404a41bad66264f807d55bd4b6967ab.nii.gz

MaxMun_c/sub-0051336/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051336_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MaxMun_c/sub-0051336/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051336_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J6/xj/MD5E-s205612--11e74478e8660d84f2287bd2f621e9a4.nii.gz/MD5E-s205612--11e74478e8660d84f2287bd2f621e9a4.nii.gz

MaxMun_c/sub-0051336/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051336_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MaxMun_c/sub-0051336/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051336_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051336/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051336_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MaxMun_c/sub-0051336/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051336_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/K1/MD5E-s309958--ec44088f8ce42c0f15f251264f187221.nii.gz/MD5E-s309958--ec44088f8ce42c0f15f251264f187221.nii.gz

MaxMun_c/sub-0051336/mri/Tian_Subcortex_S2_7T_sub-0051336_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MaxMun_c/sub-0051336/mri/Tian_Subcortex_S2_7T_sub-0051336_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vW/J7/MD5E-s24632--9b257409dd92494bb9a808b3e201f0aa.nii.gz/MD5E-s24632--9b257409dd92494bb9a808b3e201f0aa.nii.gz

MaxMun_c/sub-0051336/mri/aal3_sub-0051336_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

MaxMun_c/sub-0051336/mri/aal3_sub-0051336_T1w.nii.gz

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MaxMun_c/sub-0051336/mri/anatomy3_sub-0051336_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

MaxMun_c/sub-0051336/mri/anatomy3_sub-0051336_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051336/mri/anon_misub-0051336_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3G/2w/MD5E-s8426906--f6c1cf2847c6b2c2b4ca53df140ec32b.nii.gz/MD5E-s8426906--f6c1cf2847c6b2c2b4ca53df140ec32b.nii.gz

MaxMun_c/sub-0051336/mri/anon_msub-0051336_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q0/vf/MD5E-s9198889--e42da791fc2beab932fbe6c29b51b411.nii.gz/MD5E-s9198889--e42da791fc2beab932fbe6c29b51b411.nii.gz

MaxMun_c/sub-0051336/mri/cat_sub-0051336_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F0/3q/MD5E-s110729--e250c21af6321d2a3a3af6118b592562.nii.gz/MD5E-s110729--e250c21af6321d2a3a3af6118b592562.nii.gz

MaxMun_c/sub-0051336/mri/cobra_sub-0051336_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MaxMun_c/sub-0051336/mri/cobra_sub-0051336_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z8/Xp/MD5E-s51283--3a4bb780d731ce9113131f043ae7068f.nii.gz/MD5E-s51283--3a4bb780d731ce9113131f043ae7068f.nii.gz

MaxMun_c/sub-0051336/mri/hammers_sub-0051336_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MaxMun_c/sub-0051336/mri/hammers_sub-0051336_T1w.nii.gz

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+../../../.git/annex/objects/1v/wv/MD5E-s162214--b0da0647cc4cd44362e16d6ac6603979.nii.gz/MD5E-s162214--b0da0647cc4cd44362e16d6ac6603979.nii.gz

MaxMun_c/sub-0051336/mri/ibsr_sub-0051336_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MaxMun_c/sub-0051336/mri/ibsr_sub-0051336_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2M/Xf/MD5E-s171201--f8ca348a175b13d451c8a61c4e8a4583.nii.gz/MD5E-s171201--f8ca348a175b13d451c8a61c4e8a4583.nii.gz

MaxMun_c/sub-0051336/mri/it_sub-0051336_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/zV/xf/MD5E-s284--d4db30c50879b6f989a7e3692bb9167d.mat/MD5E-s284--d4db30c50879b6f989a7e3692bb9167d.mat

MaxMun_c/sub-0051336/mri/it_sub-0051336_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/fQ/M9/MD5E-s283--58baa09622d5ab263cd63448a0a32c56.mat/MD5E-s283--58baa09622d5ab263cd63448a0a32c56.mat

MaxMun_c/sub-0051336/mri/iy_sub-0051336_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k4/pp/MD5E-s52064139--767bc589774020ee0550d4fb4db5930f.nii.gz/MD5E-s52064139--767bc589774020ee0550d4fb4db5930f.nii.gz

MaxMun_c/sub-0051336/mri/julichbrain_sub-0051336_T1w.csv

@@ -0,0 +1 @@
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MaxMun_c/sub-0051336/mri/julichbrain_sub-0051336_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kz/xx/MD5E-s221879--b10425dd9e818590aa8bd431ec62aace.nii.gz/MD5E-s221879--b10425dd9e818590aa8bd431ec62aace.nii.gz

MaxMun_c/sub-0051336/mri/lpba40_sub-0051336_T1w.csv

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MaxMun_c/sub-0051336/mri/lpba40_sub-0051336_T1w.nii.gz

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MaxMun_c/sub-0051336/mri/m0wp1sub-0051336_T1w.nii.gz

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MaxMun_c/sub-0051336/mri/m0wp2sub-0051336_T1w.nii.gz

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MaxMun_c/sub-0051336/mri/m0wp3sub-0051336_T1w.nii.gz

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MaxMun_c/sub-0051336/mri/mori_sub-0051336_T1w.csv

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MaxMun_c/sub-0051336/mri/mori_sub-0051336_T1w.nii.gz

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MaxMun_c/sub-0051336/mri/mwp1sub-0051336_T1w.nii.gz

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MaxMun_c/sub-0051336/mri/mwp2sub-0051336_T1w.nii.gz

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MaxMun_c/sub-0051336/mri/mwp3sub-0051336_T1w.nii.gz

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MaxMun_c/sub-0051336/mri/neuromorphometrics_sub-0051336_T1w.csv

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MaxMun_c/sub-0051336/mri/neuromorphometrics_sub-0051336_T1w.nii.gz

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MaxMun_c/sub-0051336/mri/p0sub-0051336_T1w.nii.gz

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MaxMun_c/sub-0051336/mri/p1sub-0051336_T1w.nii.gz

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MaxMun_c/sub-0051336/mri/p2sub-0051336_T1w.nii.gz

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MaxMun_c/sub-0051336/mri/p3sub-0051336_T1w.nii.gz

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MaxMun_c/sub-0051336/mri/rp1sub-0051336_T1w_affine.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051336/mri/rp2sub-0051336_T1w_affine.nii.gz

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MaxMun_c/sub-0051336/mri/rp3sub-0051336_T1w_affine.nii.gz

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MaxMun_c/sub-0051336/mri/t_sub-0051336_T1w_affine_reorient.mat

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MaxMun_c/sub-0051336/mri/t_sub-0051336_T1w_rigid_reorient.mat

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MaxMun_c/sub-0051336/mri/thalamus_sub-0051336_T1w.csv

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MaxMun_c/sub-0051336/mri/thalamus_sub-0051336_T1w.nii.gz

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MaxMun_c/sub-0051336/mri/wj_sub-0051336_T1w.nii.gz

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MaxMun_c/sub-0051336/mri/wmisub-0051336_T1w.nii.gz

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MaxMun_c/sub-0051336/mri/wmsub-0051336_T1w.nii.gz

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MaxMun_c/sub-0051336/mri/wp0sub-0051336_T1w.nii.gz

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MaxMun_c/sub-0051336/mri/wp1sub-0051336_T1w.nii.gz

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