[DATALAD RUNCMD] Compute UM_2/sub-0050415

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_2/sub-0050415/anat/sub-0050415_T1w.nii.gz"
 ],
 "outputs": [
  "UM_2/sub-0050415"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_2/sub-0050415/label/catROI_sub-0050415_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/JK/8M/MD5E-s57956--fa181e77648d1b1e4cfdfe1f27cff2ea.mat/MD5E-s57956--fa181e77648d1b1e4cfdfe1f27cff2ea.mat

UM_2/sub-0050415/label/catROI_sub-0050415_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/kM/F0/MD5E-s188900--cc96624eb73d7c6dcbae26bf382367ee.xml/MD5E-s188900--cc96624eb73d7c6dcbae26bf382367ee.xml

UM_2/sub-0050415/label/catROIs_sub-0050415_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/9z/6z/MD5E-s120079--1f3fb066381a916c21bc59021be09a6b.mat/MD5E-s120079--1f3fb066381a916c21bc59021be09a6b.mat

UM_2/sub-0050415/label/catROIs_sub-0050415_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/x4/Qf/MD5E-s332103--50f2ac33ea950e499d20f85d9bc846d5.xml/MD5E-s332103--50f2ac33ea950e499d20f85d9bc846d5.xml

UM_2/sub-0050415/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050415_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_2/sub-0050415/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050415_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wF/Kz/MD5E-s125958--3d8329c9a5219691963f85b19584cbf9.nii.gz/MD5E-s125958--3d8329c9a5219691963f85b19584cbf9.nii.gz

UM_2/sub-0050415/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050415_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_2/sub-0050415/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050415_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/v8/6x/MD5E-s141058--95e1c74345f7c27f1761f2ab6c2ed696.nii.gz/MD5E-s141058--95e1c74345f7c27f1761f2ab6c2ed696.nii.gz

UM_2/sub-0050415/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050415_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_2/sub-0050415/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050415_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZV/qF/MD5E-s197617--fa31c9442545a6ff1aa5fa3b2bf9cbc8.nii.gz/MD5E-s197617--fa31c9442545a6ff1aa5fa3b2bf9cbc8.nii.gz

UM_2/sub-0050415/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050415_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_2/sub-0050415/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050415_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kv/5g/MD5E-s218793--c700dce462e49d74d352b9975de2dd3d.nii.gz/MD5E-s218793--c700dce462e49d74d352b9975de2dd3d.nii.gz

UM_2/sub-0050415/mri/Tian_Subcortex_S2_7T_sub-0050415_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_2/sub-0050415/mri/Tian_Subcortex_S2_7T_sub-0050415_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050415/mri/aal3_sub-0050415_T1w.csv

@@ -0,0 +1 @@
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UM_2/sub-0050415/mri/aal3_sub-0050415_T1w.nii.gz

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UM_2/sub-0050415/mri/anatomy3_sub-0050415_T1w.csv

@@ -0,0 +1 @@
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UM_2/sub-0050415/mri/anatomy3_sub-0050415_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050415/mri/anon_misub-0050415_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FK/29/MD5E-s3822864--16660e765558f6f5c1af4b3cf5647dfc.nii.gz/MD5E-s3822864--16660e765558f6f5c1af4b3cf5647dfc.nii.gz

UM_2/sub-0050415/mri/anon_msub-0050415_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pw/w4/MD5E-s5127622--8491f3c64114055bbe8a1ae86f7b35fd.nii.gz/MD5E-s5127622--8491f3c64114055bbe8a1ae86f7b35fd.nii.gz

UM_2/sub-0050415/mri/cat_sub-0050415_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J2/47/MD5E-s71595--e030e96d5e745f8832f415183f29d944.nii.gz/MD5E-s71595--e030e96d5e745f8832f415183f29d944.nii.gz

UM_2/sub-0050415/mri/cobra_sub-0050415_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_2/sub-0050415/mri/cobra_sub-0050415_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050415/mri/hammers_sub-0050415_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_2/sub-0050415/mri/hammers_sub-0050415_T1w.nii.gz

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UM_2/sub-0050415/mri/ibsr_sub-0050415_T1w.csv

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UM_2/sub-0050415/mri/ibsr_sub-0050415_T1w.nii.gz

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UM_2/sub-0050415/mri/it_sub-0050415_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/3x/42/MD5E-s284--1d7c1e44dcc1e50a13d13c0978cf96ab.mat/MD5E-s284--1d7c1e44dcc1e50a13d13c0978cf96ab.mat

UM_2/sub-0050415/mri/it_sub-0050415_T1w_rigid_reorient.mat

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UM_2/sub-0050415/mri/iy_sub-0050415_T1w.nii.gz

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UM_2/sub-0050415/mri/julichbrain_sub-0050415_T1w.csv

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UM_2/sub-0050415/mri/julichbrain_sub-0050415_T1w.nii.gz

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UM_2/sub-0050415/mri/lpba40_sub-0050415_T1w.csv

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UM_2/sub-0050415/mri/lpba40_sub-0050415_T1w.nii.gz

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UM_2/sub-0050415/mri/m0wp1sub-0050415_T1w.nii.gz

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UM_2/sub-0050415/mri/m0wp2sub-0050415_T1w.nii.gz

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UM_2/sub-0050415/mri/m0wp3sub-0050415_T1w.nii.gz

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UM_2/sub-0050415/mri/mori_sub-0050415_T1w.csv

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UM_2/sub-0050415/mri/mori_sub-0050415_T1w.nii.gz

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UM_2/sub-0050415/mri/mwp1sub-0050415_T1w.nii.gz

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UM_2/sub-0050415/mri/mwp2sub-0050415_T1w.nii.gz

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UM_2/sub-0050415/mri/mwp3sub-0050415_T1w.nii.gz

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UM_2/sub-0050415/mri/neuromorphometrics_sub-0050415_T1w.csv

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UM_2/sub-0050415/mri/neuromorphometrics_sub-0050415_T1w.nii.gz

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UM_2/sub-0050415/mri/p0sub-0050415_T1w.nii.gz

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UM_2/sub-0050415/mri/p1sub-0050415_T1w.nii.gz

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UM_2/sub-0050415/mri/p2sub-0050415_T1w.nii.gz

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UM_2/sub-0050415/mri/p3sub-0050415_T1w.nii.gz

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UM_2/sub-0050415/mri/rp1sub-0050415_T1w_affine.nii.gz

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UM_2/sub-0050415/mri/rp2sub-0050415_T1w_affine.nii.gz

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UM_2/sub-0050415/mri/rp3sub-0050415_T1w_affine.nii.gz

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UM_2/sub-0050415/mri/t_sub-0050415_T1w_affine_reorient.mat

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UM_2/sub-0050415/mri/t_sub-0050415_T1w_rigid_reorient.mat

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UM_2/sub-0050415/mri/thalamus_sub-0050415_T1w.csv

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UM_2/sub-0050415/mri/thalamus_sub-0050415_T1w.nii.gz

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UM_2/sub-0050415/mri/wj_sub-0050415_T1w.nii.gz

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UM_2/sub-0050415/mri/wmisub-0050415_T1w.nii.gz

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UM_2/sub-0050415/mri/wmsub-0050415_T1w.nii.gz

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UM_2/sub-0050415/mri/wp0sub-0050415_T1w.nii.gz

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UM_2/sub-0050415/mri/wp1sub-0050415_T1w.nii.gz

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