[DATALAD RUNCMD] Compute USM/sub-0050503

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050503/anat/sub-0050503_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050503"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050503/label/catROI_sub-0050503_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/k9/6g/MD5E-s61330--a4159fedb1e15af53815bc8cf04deced.mat/MD5E-s61330--a4159fedb1e15af53815bc8cf04deced.mat

USM/sub-0050503/label/catROI_sub-0050503_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z7/7z/MD5E-s189500--51e03d343aee1c242c5098cc011a4a19.xml/MD5E-s189500--51e03d343aee1c242c5098cc011a4a19.xml

USM/sub-0050503/label/catROIs_sub-0050503_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/qq/vv/MD5E-s120141--836fc07e3100a33221f66087ca57a442.mat/MD5E-s120141--836fc07e3100a33221f66087ca57a442.mat

USM/sub-0050503/label/catROIs_sub-0050503_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xj/fk/MD5E-s332138--6988b936a9e7e2e3d52d96a8615c938d.xml/MD5E-s332138--6988b936a9e7e2e3d52d96a8615c938d.xml

USM/sub-0050503/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050503_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050503/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GM/9q/MD5E-s350515--5c10075ff0a2ff6f3c896fea90ccec43.nii.gz/MD5E-s350515--5c10075ff0a2ff6f3c896fea90ccec43.nii.gz

USM/sub-0050503/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050503_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050503/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qV/WG/MD5E-s388550--e7e913b4f37948c02d75a368e941ca8f.nii.gz/MD5E-s388550--e7e913b4f37948c02d75a368e941ca8f.nii.gz

USM/sub-0050503/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050503_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050503/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZG/3K/MD5E-s562471--2435fa9d13465b8819f7415d91fe546f.nii.gz/MD5E-s562471--2435fa9d13465b8819f7415d91fe546f.nii.gz

USM/sub-0050503/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050503_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050503/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4V/W2/MD5E-s617838--5809680fed32498fa4245b51b464e873.nii.gz/MD5E-s617838--5809680fed32498fa4245b51b464e873.nii.gz

USM/sub-0050503/mri/Tian_Subcortex_S2_7T_sub-0050503_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050503/mri/Tian_Subcortex_S2_7T_sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2x/45/MD5E-s66589--978faea1027ab0c4e8eec57c9b5e686c.nii.gz/MD5E-s66589--978faea1027ab0c4e8eec57c9b5e686c.nii.gz

USM/sub-0050503/mri/aal3_sub-0050503_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050503/mri/aal3_sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7p/06/MD5E-s395824--dca315b7750e57e417798e7dd6749916.nii.gz/MD5E-s395824--dca315b7750e57e417798e7dd6749916.nii.gz

USM/sub-0050503/mri/anatomy3_sub-0050503_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050503/mri/anatomy3_sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6K/Kq/MD5E-s295341--0ef994375faebe2e88e0201925045e6d.nii.gz/MD5E-s295341--0ef994375faebe2e88e0201925045e6d.nii.gz

USM/sub-0050503/mri/anon_misub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4z/Mw/MD5E-s16325378--ec3258b9f653b292bc46b62d6e0a8674.nii.gz/MD5E-s16325378--ec3258b9f653b292bc46b62d6e0a8674.nii.gz

USM/sub-0050503/mri/anon_msub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zx/kJ/MD5E-s28789948--d2497321f21051c09ef524cb497c240f.nii.gz/MD5E-s28789948--d2497321f21051c09ef524cb497c240f.nii.gz

USM/sub-0050503/mri/cat_sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vq/Qv/MD5E-s218007--1ae86b8dea42b790bccb02adbd309768.nii.gz/MD5E-s218007--1ae86b8dea42b790bccb02adbd309768.nii.gz

USM/sub-0050503/mri/cobra_sub-0050503_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050503/mri/cobra_sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x3/xv/MD5E-s115116--c55e5870a012c5dad5e1febfcf852336.nii.gz/MD5E-s115116--c55e5870a012c5dad5e1febfcf852336.nii.gz

USM/sub-0050503/mri/hammers_sub-0050503_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050503/mri/hammers_sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3K/vv/MD5E-s317297--1b3eec4700a0598e1885c09be5d4327b.nii.gz/MD5E-s317297--1b3eec4700a0598e1885c09be5d4327b.nii.gz

USM/sub-0050503/mri/ibsr_sub-0050503_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050503/mri/ibsr_sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q1/kM/MD5E-s335013--5086bb223ea3348c6ba71e5b4a9ba3c2.nii.gz/MD5E-s335013--5086bb223ea3348c6ba71e5b4a9ba3c2.nii.gz

USM/sub-0050503/mri/it_sub-0050503_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/k2/6m/MD5E-s283--d47916d205674db4872dae460e7e500c.mat/MD5E-s283--d47916d205674db4872dae460e7e500c.mat

USM/sub-0050503/mri/it_sub-0050503_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/qq/P0/MD5E-s283--417a4ce3b0a34b5975d5fb1385ff4aec.mat/MD5E-s283--417a4ce3b0a34b5975d5fb1385ff4aec.mat

USM/sub-0050503/mri/iy_sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q6/P0/MD5E-s133284773--0cc660b236405091e9e72d6062f9b1c6.nii.gz/MD5E-s133284773--0cc660b236405091e9e72d6062f9b1c6.nii.gz

USM/sub-0050503/mri/julichbrain_sub-0050503_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050503/mri/julichbrain_sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0g/38/MD5E-s413717--bcbfeeece25f45b3663daf0e28f56dc3.nii.gz/MD5E-s413717--bcbfeeece25f45b3663daf0e28f56dc3.nii.gz

USM/sub-0050503/mri/lpba40_sub-0050503_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050503/mri/lpba40_sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5V/87/MD5E-s310507--d6f021b5ee6ac93a5a66362f1701cea6.nii.gz/MD5E-s310507--d6f021b5ee6ac93a5a66362f1701cea6.nii.gz

USM/sub-0050503/mri/m0wp1sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/v9/Pf/MD5E-s2554224--c37b59efa3026f14dc97a6d14b808076.nii.gz/MD5E-s2554224--c37b59efa3026f14dc97a6d14b808076.nii.gz

USM/sub-0050503/mri/m0wp2sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050503/mri/m0wp3sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050503/mri/mori_sub-0050503_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

USM/sub-0050503/mri/mori_sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050503/mri/mwp1sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jz/Jx/MD5E-s2566790--d9c66ed3b9ba2641b41f3997a135ff74.nii.gz/MD5E-s2566790--d9c66ed3b9ba2641b41f3997a135ff74.nii.gz

USM/sub-0050503/mri/mwp2sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050503/mri/mwp3sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4Q/Kv/MD5E-s2408966--ab301a069f5084b813ea8618f199dbe7.nii.gz/MD5E-s2408966--ab301a069f5084b813ea8618f199dbe7.nii.gz

USM/sub-0050503/mri/neuromorphometrics_sub-0050503_T1w.csv

@@ -0,0 +1 @@
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USM/sub-0050503/mri/neuromorphometrics_sub-0050503_T1w.nii.gz

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USM/sub-0050503/mri/p0sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050503/mri/p1sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZF/7Z/MD5E-s3129667--2ca96629e7c2518e93083e6ec71f06e9.nii.gz/MD5E-s3129667--2ca96629e7c2518e93083e6ec71f06e9.nii.gz

USM/sub-0050503/mri/p2sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050503/mri/p3sub-0050503_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050503/mri/rp1sub-0050503_T1w_affine.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050503/mri/rp2sub-0050503_T1w_affine.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050503/mri/rp3sub-0050503_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7Z/mx/MD5E-s246507--74ef2a1e8534a36e155b87f2958b161b.nii.gz/MD5E-s246507--74ef2a1e8534a36e155b87f2958b161b.nii.gz

USM/sub-0050503/mri/t_sub-0050503_T1w_affine_reorient.mat

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USM/sub-0050503/mri/t_sub-0050503_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/vP/K2/MD5E-s284--c8ffd5b39ebe61a23e925130f84ffc0a.mat/MD5E-s284--c8ffd5b39ebe61a23e925130f84ffc0a.mat

USM/sub-0050503/mri/thalamus_sub-0050503_T1w.csv

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USM/sub-0050503/mri/thalamus_sub-0050503_T1w.nii.gz

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USM/sub-0050503/mri/wj_sub-0050503_T1w.nii.gz

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USM/sub-0050503/mri/wmisub-0050503_T1w.nii.gz

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USM/sub-0050503/mri/wmsub-0050503_T1w.nii.gz

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USM/sub-0050503/mri/wp0sub-0050503_T1w.nii.gz

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USM/sub-0050503/mri/wp1sub-0050503_T1w.nii.gz

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USM/sub-0050503/mri/wp2sub-0050503_T1w.nii.gz

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USM/sub-0050503/mri/wp3sub-0050503_T1w.nii.gz

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