[DATALAD RUNCMD] Compute CMU_b/sub-0050651

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/CMU_b/sub-0050651/anat/sub-0050651_T1w.nii.gz"
 ],
 "outputs": [
  "CMU_b/sub-0050651"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

CMU_b/sub-0050651/label/catROI_sub-0050651_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/70/4g/MD5E-s58297--e83ea22cc135f7960127d9754088f47b.mat/MD5E-s58297--e83ea22cc135f7960127d9754088f47b.mat

CMU_b/sub-0050651/label/catROI_sub-0050651_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/9x/mg/MD5E-s188327--36f87e5aa992efee4971b6080ce9ea53.xml/MD5E-s188327--36f87e5aa992efee4971b6080ce9ea53.xml

CMU_b/sub-0050651/label/catROIs_sub-0050651_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/3V/wZ/MD5E-s120162--597eb00e606df2f7acc2f9289aaeb6d7.mat/MD5E-s120162--597eb00e606df2f7acc2f9289aaeb6d7.mat

CMU_b/sub-0050651/label/catROIs_sub-0050651_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/J9/qW/MD5E-s332157--0eccff50607d7314e7bf16693e040c97.xml/MD5E-s332157--0eccff50607d7314e7bf16693e040c97.xml

CMU_b/sub-0050651/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050651_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

CMU_b/sub-0050651/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P5/X1/MD5E-s189929--ee04e600d948e260b24621935f852972.nii.gz/MD5E-s189929--ee04e600d948e260b24621935f852972.nii.gz

CMU_b/sub-0050651/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050651_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

CMU_b/sub-0050651/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4v/5G/MD5E-s214741--83464fe5b7da33b171b118844d607253.nii.gz/MD5E-s214741--83464fe5b7da33b171b118844d607253.nii.gz

CMU_b/sub-0050651/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050651_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

CMU_b/sub-0050651/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gj/2w/MD5E-s287603--66d972f7cfca141c3af743f74d526af6.nii.gz/MD5E-s287603--66d972f7cfca141c3af743f74d526af6.nii.gz

CMU_b/sub-0050651/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050651_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

CMU_b/sub-0050651/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/28/V7/MD5E-s321580--fab33382aa149fd594361932135b2fa8.nii.gz/MD5E-s321580--fab33382aa149fd594361932135b2fa8.nii.gz

CMU_b/sub-0050651/mri/Tian_Subcortex_S2_7T_sub-0050651_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

CMU_b/sub-0050651/mri/Tian_Subcortex_S2_7T_sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FV/Px/MD5E-s26743--f16da0fa541f17ff8e463ab933707542.nii.gz/MD5E-s26743--f16da0fa541f17ff8e463ab933707542.nii.gz

CMU_b/sub-0050651/mri/aal3_sub-0050651_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

CMU_b/sub-0050651/mri/aal3_sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/kJ/MD5E-s216423--d8bf235bf2f9e97b389a0441afda784a.nii.gz/MD5E-s216423--d8bf235bf2f9e97b389a0441afda784a.nii.gz

CMU_b/sub-0050651/mri/anatomy3_sub-0050651_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

CMU_b/sub-0050651/mri/anatomy3_sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5f/WF/MD5E-s155244--310edfeaeb38041f2277271c11f84c34.nii.gz/MD5E-s155244--310edfeaeb38041f2277271c11f84c34.nii.gz

CMU_b/sub-0050651/mri/anon_misub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9V/Jm/MD5E-s9916185--d9bd453de87afd8ba0654ecd8ec6272d.nii.gz/MD5E-s9916185--d9bd453de87afd8ba0654ecd8ec6272d.nii.gz

CMU_b/sub-0050651/mri/anon_msub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vF/JJ/MD5E-s10838590--8195164de2f13df0061c4ba2ef4959cb.nii.gz/MD5E-s10838590--8195164de2f13df0061c4ba2ef4959cb.nii.gz

CMU_b/sub-0050651/mri/cat_sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G1/QJ/MD5E-s115063--a26ada7394fedd0623568063f8b44e5c.nii.gz/MD5E-s115063--a26ada7394fedd0623568063f8b44e5c.nii.gz

CMU_b/sub-0050651/mri/cobra_sub-0050651_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

CMU_b/sub-0050651/mri/cobra_sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kG/m5/MD5E-s52720--bf721f75d9bd8b266f401424a350c6ba.nii.gz/MD5E-s52720--bf721f75d9bd8b266f401424a350c6ba.nii.gz

CMU_b/sub-0050651/mri/hammers_sub-0050651_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

CMU_b/sub-0050651/mri/hammers_sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J7/4j/MD5E-s167330--4cbef9909b082de89afbee55562d58f6.nii.gz/MD5E-s167330--4cbef9909b082de89afbee55562d58f6.nii.gz

CMU_b/sub-0050651/mri/ibsr_sub-0050651_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

CMU_b/sub-0050651/mri/ibsr_sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9q/7J/MD5E-s178847--c895568c311283073a99dc755f8fbece.nii.gz/MD5E-s178847--c895568c311283073a99dc755f8fbece.nii.gz

CMU_b/sub-0050651/mri/it_sub-0050651_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/47/q0/MD5E-s283--a277dc4c633330f0dc549ebe1941e69d.mat/MD5E-s283--a277dc4c633330f0dc549ebe1941e69d.mat

CMU_b/sub-0050651/mri/it_sub-0050651_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/K1/kk/MD5E-s283--466f8ef741503b0d7db194efe75274f5.mat/MD5E-s283--466f8ef741503b0d7db194efe75274f5.mat

CMU_b/sub-0050651/mri/iy_sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/v4/Wz/MD5E-s53842247--96c26b873832b1016e87a607ca5a78e7.nii.gz/MD5E-s53842247--96c26b873832b1016e87a607ca5a78e7.nii.gz

CMU_b/sub-0050651/mri/julichbrain_sub-0050651_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

CMU_b/sub-0050651/mri/julichbrain_sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JW/w0/MD5E-s229843--7f63538b9a564a5a5547e89696215219.nii.gz/MD5E-s229843--7f63538b9a564a5a5547e89696215219.nii.gz

CMU_b/sub-0050651/mri/lpba40_sub-0050651_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

CMU_b/sub-0050651/mri/lpba40_sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4k/6j/MD5E-s164667--87a83516ee424afe20b5a64ddac1bd12.nii.gz/MD5E-s164667--87a83516ee424afe20b5a64ddac1bd12.nii.gz

CMU_b/sub-0050651/mri/m0wp1sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5P/Q6/MD5E-s2583386--882624d47464ca7f639f86ab50c354d0.nii.gz/MD5E-s2583386--882624d47464ca7f639f86ab50c354d0.nii.gz

CMU_b/sub-0050651/mri/m0wp2sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w7/Kg/MD5E-s2351813--fe54653beb39c62bf13a230c9cd7813e.nii.gz/MD5E-s2351813--fe54653beb39c62bf13a230c9cd7813e.nii.gz

CMU_b/sub-0050651/mri/m0wp3sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/g1/Qq/MD5E-s2532834--22cb6daca1998a74065b8601d4cce4c6.nii.gz/MD5E-s2532834--22cb6daca1998a74065b8601d4cce4c6.nii.gz

CMU_b/sub-0050651/mri/mori_sub-0050651_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

CMU_b/sub-0050651/mri/mori_sub-0050651_T1w.nii.gz

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CMU_b/sub-0050651/mri/mwp1sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/94/3v/MD5E-s2582082--6ae6effab72b6b81ee94dc929919af01.nii.gz/MD5E-s2582082--6ae6effab72b6b81ee94dc929919af01.nii.gz

CMU_b/sub-0050651/mri/mwp2sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F0/J0/MD5E-s2349777--c5fed2e01a9aaec622b823dccdcee43b.nii.gz/MD5E-s2349777--c5fed2e01a9aaec622b823dccdcee43b.nii.gz

CMU_b/sub-0050651/mri/mwp3sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K9/Vp/MD5E-s2529748--a9c5a5b93636c4e75b25ccf5b3b0334d.nii.gz/MD5E-s2529748--a9c5a5b93636c4e75b25ccf5b3b0334d.nii.gz

CMU_b/sub-0050651/mri/neuromorphometrics_sub-0050651_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

CMU_b/sub-0050651/mri/neuromorphometrics_sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W5/F7/MD5E-s230013--3f6916b8f03973315eae679d4ba4fc1f.nii.gz/MD5E-s230013--3f6916b8f03973315eae679d4ba4fc1f.nii.gz

CMU_b/sub-0050651/mri/p0sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8x/K6/MD5E-s777171--faf58f04c83a9e592c15d24c494f92be.nii.gz/MD5E-s777171--faf58f04c83a9e592c15d24c494f92be.nii.gz

CMU_b/sub-0050651/mri/p1sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vk/fm/MD5E-s828633--1a0348f454c7e3a196fe50adf5dd7963.nii.gz/MD5E-s828633--1a0348f454c7e3a196fe50adf5dd7963.nii.gz

CMU_b/sub-0050651/mri/p2sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050651/mri/p3sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050651/mri/rp1sub-0050651_T1w_affine.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050651/mri/rp2sub-0050651_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/96/7X/MD5E-s329182--0d654849c289bcfa981dab2bcb6da3fc.nii.gz/MD5E-s329182--0d654849c289bcfa981dab2bcb6da3fc.nii.gz

CMU_b/sub-0050651/mri/rp3sub-0050651_T1w_affine.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050651/mri/t_sub-0050651_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/wJ/WF/MD5E-s284--43772e206b8b0dfa914049eae2ec1d16.mat/MD5E-s284--43772e206b8b0dfa914049eae2ec1d16.mat

CMU_b/sub-0050651/mri/t_sub-0050651_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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CMU_b/sub-0050651/mri/thalamus_sub-0050651_T1w.csv

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CMU_b/sub-0050651/mri/thalamus_sub-0050651_T1w.nii.gz

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CMU_b/sub-0050651/mri/wj_sub-0050651_T1w.nii.gz

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CMU_b/sub-0050651/mri/wmisub-0050651_T1w.nii.gz

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CMU_b/sub-0050651/mri/wmsub-0050651_T1w.nii.gz

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CMU_b/sub-0050651/mri/wp0sub-0050651_T1w.nii.gz

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CMU_b/sub-0050651/mri/wp1sub-0050651_T1w.nii.gz

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CMU_b/sub-0050651/mri/wp2sub-0050651_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050651/mri/wp3sub-0050651_T1w.nii.gz

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