[DATALAD RUNCMD] Compute Leuven_2/sub-0050738

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Leuven_2/sub-0050738/anat/sub-0050738_T1w.nii.gz"
 ],
 "outputs": [
  "Leuven_2/sub-0050738"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Leuven_2/sub-0050738/label/catROI_sub-0050738_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/gG/K0/MD5E-s61319--1dbfb47761e89523774a33bffab68ded.mat/MD5E-s61319--1dbfb47761e89523774a33bffab68ded.mat

Leuven_2/sub-0050738/label/catROI_sub-0050738_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/6V/MV/MD5E-s188574--9f299edfc81fbc941e524bc4506d81ed.xml/MD5E-s188574--9f299edfc81fbc941e524bc4506d81ed.xml

Leuven_2/sub-0050738/label/catROIs_sub-0050738_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/F4/xq/MD5E-s120029--a640fa3ea0c037ff92637c03f108206a.mat/MD5E-s120029--a640fa3ea0c037ff92637c03f108206a.mat

Leuven_2/sub-0050738/label/catROIs_sub-0050738_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/qw/pM/MD5E-s332171--4cb1ac3249d74542cfc24a0390973b71.xml/MD5E-s332171--4cb1ac3249d74542cfc24a0390973b71.xml

Leuven_2/sub-0050738/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050738_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Leuven_2/sub-0050738/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050738_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xZ/pf/MD5E-s179873--148343854a362fa7e52f9635974afc4c.nii.gz/MD5E-s179873--148343854a362fa7e52f9635974afc4c.nii.gz

Leuven_2/sub-0050738/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050738_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Leuven_2/sub-0050738/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050738_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WX/ZF/MD5E-s201549--005fc7117db850533fd457fd09f62488.nii.gz/MD5E-s201549--005fc7117db850533fd457fd09f62488.nii.gz

Leuven_2/sub-0050738/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050738_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Leuven_2/sub-0050738/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050738_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w4/fQ/MD5E-s256293--637a1267e34872589c8ecaad7ea4f2a3.nii.gz/MD5E-s256293--637a1267e34872589c8ecaad7ea4f2a3.nii.gz

Leuven_2/sub-0050738/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050738_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Leuven_2/sub-0050738/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050738_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/86/Kj/MD5E-s285506--df2d5327cd63143a3ab309004e123b6e.nii.gz/MD5E-s285506--df2d5327cd63143a3ab309004e123b6e.nii.gz

Leuven_2/sub-0050738/mri/Tian_Subcortex_S2_7T_sub-0050738_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Leuven_2/sub-0050738/mri/Tian_Subcortex_S2_7T_sub-0050738_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p3/7p/MD5E-s25631--45c0646f2de7f8d1a625d550434a0cc1.nii.gz/MD5E-s25631--45c0646f2de7f8d1a625d550434a0cc1.nii.gz

Leuven_2/sub-0050738/mri/aal3_sub-0050738_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Leuven_2/sub-0050738/mri/aal3_sub-0050738_T1w.nii.gz

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Leuven_2/sub-0050738/mri/anatomy3_sub-0050738_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Leuven_2/sub-0050738/mri/anatomy3_sub-0050738_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050738/mri/anon_misub-0050738_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kP/qf/MD5E-s4793004--e733b520d7739cd4ed11dd0fa8b3829b.nii.gz/MD5E-s4793004--e733b520d7739cd4ed11dd0fa8b3829b.nii.gz

Leuven_2/sub-0050738/mri/anon_msub-0050738_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6z/P4/MD5E-s11561302--612689caae838691023827da96dc6719.nii.gz/MD5E-s11561302--612689caae838691023827da96dc6719.nii.gz

Leuven_2/sub-0050738/mri/cat_sub-0050738_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fx/qp/MD5E-s105024--9d45a16f56dce3a9b1ff91c95d31a52f.nii.gz/MD5E-s105024--9d45a16f56dce3a9b1ff91c95d31a52f.nii.gz

Leuven_2/sub-0050738/mri/cobra_sub-0050738_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Leuven_2/sub-0050738/mri/cobra_sub-0050738_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9m/4w/MD5E-s49878--eadcf7e744897f0219e5c167ed9bfaca.nii.gz/MD5E-s49878--eadcf7e744897f0219e5c167ed9bfaca.nii.gz

Leuven_2/sub-0050738/mri/hammers_sub-0050738_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Leuven_2/sub-0050738/mri/hammers_sub-0050738_T1w.nii.gz

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Leuven_2/sub-0050738/mri/ibsr_sub-0050738_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Leuven_2/sub-0050738/mri/ibsr_sub-0050738_T1w.nii.gz

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Leuven_2/sub-0050738/mri/it_sub-0050738_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/fF/MW/MD5E-s283--3dd7bf087e76fe6c284b7d3ab630e6af.mat/MD5E-s283--3dd7bf087e76fe6c284b7d3ab630e6af.mat

Leuven_2/sub-0050738/mri/it_sub-0050738_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/4K/w5/MD5E-s284--50b81522e7d27d5e2fadd2244aa40b9e.mat/MD5E-s284--50b81522e7d27d5e2fadd2244aa40b9e.mat

Leuven_2/sub-0050738/mri/iy_sub-0050738_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8J/5P/MD5E-s41224561--3bc8e9dfa95929d0b7616f5e2319d763.nii.gz/MD5E-s41224561--3bc8e9dfa95929d0b7616f5e2319d763.nii.gz

Leuven_2/sub-0050738/mri/julichbrain_sub-0050738_T1w.csv

@@ -0,0 +1 @@
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Leuven_2/sub-0050738/mri/julichbrain_sub-0050738_T1w.nii.gz

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Leuven_2/sub-0050738/mri/lpba40_sub-0050738_T1w.csv

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Leuven_2/sub-0050738/mri/lpba40_sub-0050738_T1w.nii.gz

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Leuven_2/sub-0050738/mri/m0wp1sub-0050738_T1w.nii.gz

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Leuven_2/sub-0050738/mri/m0wp2sub-0050738_T1w.nii.gz

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Leuven_2/sub-0050738/mri/m0wp3sub-0050738_T1w.nii.gz

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Leuven_2/sub-0050738/mri/mori_sub-0050738_T1w.csv

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Leuven_2/sub-0050738/mri/mori_sub-0050738_T1w.nii.gz

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Leuven_2/sub-0050738/mri/mwp1sub-0050738_T1w.nii.gz

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Leuven_2/sub-0050738/mri/mwp2sub-0050738_T1w.nii.gz

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Leuven_2/sub-0050738/mri/mwp3sub-0050738_T1w.nii.gz

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Leuven_2/sub-0050738/mri/neuromorphometrics_sub-0050738_T1w.csv

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Leuven_2/sub-0050738/mri/neuromorphometrics_sub-0050738_T1w.nii.gz

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Leuven_2/sub-0050738/mri/p0sub-0050738_T1w.nii.gz

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Leuven_2/sub-0050738/mri/p1sub-0050738_T1w.nii.gz

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Leuven_2/sub-0050738/mri/p2sub-0050738_T1w.nii.gz

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Leuven_2/sub-0050738/mri/p3sub-0050738_T1w.nii.gz

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Leuven_2/sub-0050738/mri/rp1sub-0050738_T1w_affine.nii.gz

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Leuven_2/sub-0050738/mri/rp2sub-0050738_T1w_affine.nii.gz

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Leuven_2/sub-0050738/mri/rp3sub-0050738_T1w_affine.nii.gz

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Leuven_2/sub-0050738/mri/t_sub-0050738_T1w_affine_reorient.mat

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Leuven_2/sub-0050738/mri/t_sub-0050738_T1w_rigid_reorient.mat

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Leuven_2/sub-0050738/mri/thalamus_sub-0050738_T1w.csv

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Leuven_2/sub-0050738/mri/thalamus_sub-0050738_T1w.nii.gz

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Leuven_2/sub-0050738/mri/wj_sub-0050738_T1w.nii.gz

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Leuven_2/sub-0050738/mri/wmisub-0050738_T1w.nii.gz

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Leuven_2/sub-0050738/mri/wmsub-0050738_T1w.nii.gz

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Leuven_2/sub-0050738/mri/wp0sub-0050738_T1w.nii.gz

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Leuven_2/sub-0050738/mri/wp1sub-0050738_T1w.nii.gz

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Leuven_2/sub-0050738/mri/wp2sub-0050738_T1w.nii.gz

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