[DATALAD RUNCMD] Compute UM_1/sub-0050365

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050365/anat/sub-0050365_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050365"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050365/label/catROI_sub-0050365_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/44/5G/MD5E-s61310--6282b226bd6fdc911a34f7ea7dcd1155.mat/MD5E-s61310--6282b226bd6fdc911a34f7ea7dcd1155.mat

UM_1/sub-0050365/label/catROI_sub-0050365_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zw/2Z/MD5E-s189258--04d55e31626b730d2b90c6dbfabfba9d.xml/MD5E-s189258--04d55e31626b730d2b90c6dbfabfba9d.xml

UM_1/sub-0050365/label/catROIs_sub-0050365_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/WJ/k9/MD5E-s120134--d8c485c9065d6ee8f56c545657b9fbd4.mat/MD5E-s120134--d8c485c9065d6ee8f56c545657b9fbd4.mat

UM_1/sub-0050365/label/catROIs_sub-0050365_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z9/QW/MD5E-s332171--210d0704abbe0057cf113e95e62e1045.xml/MD5E-s332171--210d0704abbe0057cf113e95e62e1045.xml

UM_1/sub-0050365/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050365_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050365/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050365_T1w.nii.gz

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+../../../.git/annex/objects/ZJ/g2/MD5E-s137435--fba88dbc98b494178af1361e9992bda7.nii.gz/MD5E-s137435--fba88dbc98b494178af1361e9992bda7.nii.gz

UM_1/sub-0050365/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050365_T1w.csv

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+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_1/sub-0050365/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050365_T1w.nii.gz

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+../../../.git/annex/objects/xg/V8/MD5E-s153913--3a1d4c1561d61d3ef3585e544ee3567c.nii.gz/MD5E-s153913--3a1d4c1561d61d3ef3585e544ee3567c.nii.gz

UM_1/sub-0050365/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050365_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050365/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050365_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vz/QX/MD5E-s194574--0ecc7d5f1d07d278b136f627884ee012.nii.gz/MD5E-s194574--0ecc7d5f1d07d278b136f627884ee012.nii.gz

UM_1/sub-0050365/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050365_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050365/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050365_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qF/4x/MD5E-s217187--debbb15510cb3ad5f59c17036fc50f47.nii.gz/MD5E-s217187--debbb15510cb3ad5f59c17036fc50f47.nii.gz

UM_1/sub-0050365/mri/Tian_Subcortex_S2_7T_sub-0050365_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050365/mri/Tian_Subcortex_S2_7T_sub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/aal3_sub-0050365_T1w.csv

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UM_1/sub-0050365/mri/aal3_sub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/anatomy3_sub-0050365_T1w.csv

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UM_1/sub-0050365/mri/anatomy3_sub-0050365_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050365/mri/anon_misub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/anon_msub-0050365_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KJ/xZ/MD5E-s5847409--db008df29aded6fe43779f751122ac34.nii.gz/MD5E-s5847409--db008df29aded6fe43779f751122ac34.nii.gz

UM_1/sub-0050365/mri/cat_sub-0050365_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8v/pm/MD5E-s81476--83a9c2345a381a1bf65dc943d5efdd82.nii.gz/MD5E-s81476--83a9c2345a381a1bf65dc943d5efdd82.nii.gz

UM_1/sub-0050365/mri/cobra_sub-0050365_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050365/mri/cobra_sub-0050365_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050365/mri/hammers_sub-0050365_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050365/mri/hammers_sub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/ibsr_sub-0050365_T1w.csv

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UM_1/sub-0050365/mri/ibsr_sub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/it_sub-0050365_T1w_affine_reorient.mat

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UM_1/sub-0050365/mri/it_sub-0050365_T1w_rigid_reorient.mat

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UM_1/sub-0050365/mri/iy_sub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/julichbrain_sub-0050365_T1w.csv

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UM_1/sub-0050365/mri/julichbrain_sub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/lpba40_sub-0050365_T1w.csv

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UM_1/sub-0050365/mri/lpba40_sub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/m0wp1sub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/m0wp2sub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/m0wp3sub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/mori_sub-0050365_T1w.csv

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UM_1/sub-0050365/mri/mori_sub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/mwp1sub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/mwp2sub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/mwp3sub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/neuromorphometrics_sub-0050365_T1w.csv

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UM_1/sub-0050365/mri/neuromorphometrics_sub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/p0sub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/p1sub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/p2sub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/p3sub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/rp1sub-0050365_T1w_affine.nii.gz

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UM_1/sub-0050365/mri/rp2sub-0050365_T1w_affine.nii.gz

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UM_1/sub-0050365/mri/rp3sub-0050365_T1w_affine.nii.gz

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UM_1/sub-0050365/mri/t_sub-0050365_T1w_affine_reorient.mat

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UM_1/sub-0050365/mri/t_sub-0050365_T1w_rigid_reorient.mat

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UM_1/sub-0050365/mri/thalamus_sub-0050365_T1w.csv

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UM_1/sub-0050365/mri/thalamus_sub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/wj_sub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/wmisub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/wmsub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/wp0sub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/wp1sub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/wp2sub-0050365_T1w.nii.gz

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UM_1/sub-0050365/mri/wp3sub-0050365_T1w.nii.gz

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