Procházet zdrojové kódy

[DATALAD RUNCMD] Compute OHSU/sub-0050157

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/OHSU/sub-0050157/anat/sub-0050157_T1w.nii.gz"
 ],
 "outputs": [
  "OHSU/sub-0050157"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
Felix Hoffstaedter před 6 měsíci
rodič
revize
72c4d6e27c
100 změnil soubory, kde provedl 99 přidání a 0 odebrání
  1. 1 0
      OHSU/sub-0050157/label/catROI_sub-0050157_T1w.mat
  2. 1 0
      OHSU/sub-0050157/label/catROI_sub-0050157_T1w.xml
  3. 1 0
      OHSU/sub-0050157/label/catROIs_sub-0050157_T1w.mat
  4. 1 0
      OHSU/sub-0050157/label/catROIs_sub-0050157_T1w.xml
  5. 1 0
      OHSU/sub-0050157/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050157_T1w.csv
  6. 1 0
      OHSU/sub-0050157/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050157_T1w.nii.gz
  7. 1 0
      OHSU/sub-0050157/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050157_T1w.csv
  8. 1 0
      OHSU/sub-0050157/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050157_T1w.nii.gz
  9. 1 0
      OHSU/sub-0050157/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050157_T1w.csv
  10. 1 0
      OHSU/sub-0050157/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050157_T1w.nii.gz
  11. 1 0
      OHSU/sub-0050157/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050157_T1w.csv
  12. 1 0
      OHSU/sub-0050157/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050157_T1w.nii.gz
  13. 1 0
      OHSU/sub-0050157/mri/Tian_Subcortex_S2_7T_sub-0050157_T1w.csv
  14. 1 0
      OHSU/sub-0050157/mri/Tian_Subcortex_S2_7T_sub-0050157_T1w.nii.gz
  15. 1 0
      OHSU/sub-0050157/mri/aal3_sub-0050157_T1w.csv
  16. 1 0
      OHSU/sub-0050157/mri/aal3_sub-0050157_T1w.nii.gz
  17. 1 0
      OHSU/sub-0050157/mri/anatomy3_sub-0050157_T1w.csv
  18. 1 0
      OHSU/sub-0050157/mri/anatomy3_sub-0050157_T1w.nii.gz
  19. 1 0
      OHSU/sub-0050157/mri/anon_misub-0050157_T1w.nii.gz
  20. 1 0
      OHSU/sub-0050157/mri/anon_msub-0050157_T1w.nii.gz
  21. 1 0
      OHSU/sub-0050157/mri/cat_sub-0050157_T1w.nii.gz
  22. 1 0
      OHSU/sub-0050157/mri/cobra_sub-0050157_T1w.csv
  23. 1 0
      OHSU/sub-0050157/mri/cobra_sub-0050157_T1w.nii.gz
  24. 1 0
      OHSU/sub-0050157/mri/hammers_sub-0050157_T1w.csv
  25. 1 0
      OHSU/sub-0050157/mri/hammers_sub-0050157_T1w.nii.gz
  26. 1 0
      OHSU/sub-0050157/mri/ibsr_sub-0050157_T1w.csv
  27. 1 0
      OHSU/sub-0050157/mri/ibsr_sub-0050157_T1w.nii.gz
  28. 1 0
      OHSU/sub-0050157/mri/it_sub-0050157_T1w_affine_reorient.mat
  29. 1 0
      OHSU/sub-0050157/mri/it_sub-0050157_T1w_rigid_reorient.mat
  30. 1 0
      OHSU/sub-0050157/mri/iy_sub-0050157_T1w.nii.gz
  31. 1 0
      OHSU/sub-0050157/mri/julichbrain_sub-0050157_T1w.csv
  32. 1 0
      OHSU/sub-0050157/mri/julichbrain_sub-0050157_T1w.nii.gz
  33. 1 0
      OHSU/sub-0050157/mri/lpba40_sub-0050157_T1w.csv
  34. 1 0
      OHSU/sub-0050157/mri/lpba40_sub-0050157_T1w.nii.gz
  35. 1 0
      OHSU/sub-0050157/mri/m0wp1sub-0050157_T1w.nii.gz
  36. 1 0
      OHSU/sub-0050157/mri/m0wp2sub-0050157_T1w.nii.gz
  37. 1 0
      OHSU/sub-0050157/mri/m0wp3sub-0050157_T1w.nii.gz
  38. 1 0
      OHSU/sub-0050157/mri/mori_sub-0050157_T1w.csv
  39. 1 0
      OHSU/sub-0050157/mri/mori_sub-0050157_T1w.nii.gz
  40. 1 0
      OHSU/sub-0050157/mri/mwp1sub-0050157_T1w.nii.gz
  41. 1 0
      OHSU/sub-0050157/mri/mwp2sub-0050157_T1w.nii.gz
  42. 1 0
      OHSU/sub-0050157/mri/mwp3sub-0050157_T1w.nii.gz
  43. 1 0
      OHSU/sub-0050157/mri/neuromorphometrics_sub-0050157_T1w.csv
  44. 1 0
      OHSU/sub-0050157/mri/neuromorphometrics_sub-0050157_T1w.nii.gz
  45. 1 0
      OHSU/sub-0050157/mri/p0sub-0050157_T1w.nii.gz
  46. 1 0
      OHSU/sub-0050157/mri/p1sub-0050157_T1w.nii.gz
  47. 1 0
      OHSU/sub-0050157/mri/p2sub-0050157_T1w.nii.gz
  48. 1 0
      OHSU/sub-0050157/mri/p3sub-0050157_T1w.nii.gz
  49. 1 0
      OHSU/sub-0050157/mri/rp1sub-0050157_T1w_affine.nii.gz
  50. 1 0
      OHSU/sub-0050157/mri/rp2sub-0050157_T1w_affine.nii.gz
  51. 1 0
      OHSU/sub-0050157/mri/rp3sub-0050157_T1w_affine.nii.gz
  52. 1 0
      OHSU/sub-0050157/mri/t_sub-0050157_T1w_affine_reorient.mat
  53. 1 0
      OHSU/sub-0050157/mri/t_sub-0050157_T1w_rigid_reorient.mat
  54. 1 0
      OHSU/sub-0050157/mri/thalamus_sub-0050157_T1w.csv
  55. 1 0
      OHSU/sub-0050157/mri/thalamus_sub-0050157_T1w.nii.gz
  56. 1 0
      OHSU/sub-0050157/mri/wj_sub-0050157_T1w.nii.gz
  57. 1 0
      OHSU/sub-0050157/mri/wmisub-0050157_T1w.nii.gz
  58. 1 0
      OHSU/sub-0050157/mri/wmsub-0050157_T1w.nii.gz
  59. 1 0
      OHSU/sub-0050157/mri/wp0sub-0050157_T1w.nii.gz
  60. 1 0
      OHSU/sub-0050157/mri/wp1sub-0050157_T1w.nii.gz
  61. 1 0
      OHSU/sub-0050157/mri/wp2sub-0050157_T1w.nii.gz
  62. 1 0
      OHSU/sub-0050157/mri/wp3sub-0050157_T1w.nii.gz
  63. 1 0
      OHSU/sub-0050157/mri/y_sub-0050157_T1w.nii.gz
  64. 1 0
      OHSU/sub-0050157/report/cat_sub-0050157_T1w.mat
  65. 1 0
      OHSU/sub-0050157/report/cat_sub-0050157_T1w.xml
  66. 1 0
      OHSU/sub-0050157/report/catlog_sub-0050157_T1w.nii.txt
  67. 1 0
      OHSU/sub-0050157/report/catreport_sub-0050157_T1w.pdf
  68. 1 0
      OHSU/sub-0050157/report/catreportj_sub-0050157_T1w.jpg
  69. 1 0
      OHSU/sub-0050157/surf/lh.area.sub-0050157_T1w
  70. 1 0
      OHSU/sub-0050157/surf/lh.central.sub-0050157_T1w.gii
  71. 1 0
      OHSU/sub-0050157/surf/lh.depth.sub-0050157_T1w
  72. 1 0
      OHSU/sub-0050157/surf/lh.edgemap32k.sub-0050157_T1w.mat
  73. 1 0
      OHSU/sub-0050157/surf/lh.fractaldimension.sub-0050157_T1w
  74. 1 0
      OHSU/sub-0050157/surf/lh.gmv.sub-0050157_T1w
  75. 1 0
      OHSU/sub-0050157/surf/lh.gyrification.sub-0050157_T1w
  76. 1 0
      OHSU/sub-0050157/surf/lh.pbt.sub-0050157_T1w
  77. 1 0
      OHSU/sub-0050157/surf/lh.sphere.reg.sub-0050157_T1w.gii
  78. 1 0
      OHSU/sub-0050157/surf/lh.sphere.sub-0050157_T1w.gii
  79. 1 0
      OHSU/sub-0050157/surf/lh.thickness.sub-0050157_T1w
  80. 1 0
      OHSU/sub-0050157/surf/lh.toroGI20mm.sub-0050157_T1w
  81. 1 0
      OHSU/sub-0050157/surf/rh.area.sub-0050157_T1w
  82. 1 0
      OHSU/sub-0050157/surf/rh.central.sub-0050157_T1w.gii
  83. 1 0
      OHSU/sub-0050157/surf/rh.depth.sub-0050157_T1w
  84. 1 0
      OHSU/sub-0050157/surf/rh.edgemap32k.sub-0050157_T1w.mat
  85. 1 0
      OHSU/sub-0050157/surf/rh.fractaldimension.sub-0050157_T1w
  86. 1 0
      OHSU/sub-0050157/surf/rh.gmv.sub-0050157_T1w
  87. 1 0
      OHSU/sub-0050157/surf/rh.gyrification.sub-0050157_T1w
  88. 1 0
      OHSU/sub-0050157/surf/rh.pbt.sub-0050157_T1w
  89. 1 0
      OHSU/sub-0050157/surf/rh.sphere.reg.sub-0050157_T1w.gii
  90. 1 0
      OHSU/sub-0050157/surf/rh.sphere.sub-0050157_T1w.gii
  91. 1 0
      OHSU/sub-0050157/surf/rh.thickness.sub-0050157_T1w
  92. 1 0
      OHSU/sub-0050157/surf/rh.toroGI20mm.sub-0050157_T1w
  93. 1 0
      OHSU/sub-0050157/surf/s12.mesh.thickness.resampled_32k.sub-0050157_T1w.dat
  94. 1 0
      OHSU/sub-0050157/surf/s12.mesh.thickness.resampled_32k.sub-0050157_T1w.gii
  95. 1 0
      OHSU/sub-0050157/surf/s22.mesh.area.resampled_32k.sub-0050157_T1w.dat
  96. 1 0
      OHSU/sub-0050157/surf/s22.mesh.area.resampled_32k.sub-0050157_T1w.gii
  97. 1 0
      OHSU/sub-0050157/surf/s22.mesh.depth.resampled_32k.sub-0050157_T1w.dat
  98. 1 0
      OHSU/sub-0050157/surf/s22.mesh.depth.resampled_32k.sub-0050157_T1w.gii
  99. 1 0
      OHSU/sub-0050157/surf/s22.mesh.fractaldimension.resampled_32k.sub-0050157_T1w.dat
  100. 0 0
      OHSU/sub-0050157/surf/s22.mesh.fractaldimension.resampled_32k.sub-0050157_T1w.gii

+ 1 - 0
OHSU/sub-0050157/label/catROI_sub-0050157_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/99/2M/MD5E-s61357--6cbeeb36802bc80f0b100a4ec1c31561.mat/MD5E-s61357--6cbeeb36802bc80f0b100a4ec1c31561.mat

+ 1 - 0
OHSU/sub-0050157/label/catROI_sub-0050157_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/q3/M2/MD5E-s188759--4aac577cb67f0bf6c8dd8c06e62bc851.xml/MD5E-s188759--4aac577cb67f0bf6c8dd8c06e62bc851.xml

+ 1 - 0
OHSU/sub-0050157/label/catROIs_sub-0050157_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/MV/3W/MD5E-s120038--dbce0a7b0a91c42631a1b695ee2220bb.mat/MD5E-s120038--dbce0a7b0a91c42631a1b695ee2220bb.mat

+ 1 - 0
OHSU/sub-0050157/label/catROIs_sub-0050157_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZV/MZ/MD5E-s332071--e756cc9053487b83aaf8709f549047c9.xml/MD5E-s332071--e756cc9053487b83aaf8709f549047c9.xml

+ 1 - 0
OHSU/sub-0050157/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050157_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

+ 1 - 0
OHSU/sub-0050157/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050157_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/m0/k0/MD5E-s168844--a58c5d1e0558d35083034fc878ae106a.nii.gz/MD5E-s168844--a58c5d1e0558d35083034fc878ae106a.nii.gz

+ 1 - 0
OHSU/sub-0050157/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050157_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

+ 1 - 0
OHSU/sub-0050157/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050157_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7J/Px/MD5E-s188556--1fd295a88186a5354c31ed454df1511b.nii.gz/MD5E-s188556--1fd295a88186a5354c31ed454df1511b.nii.gz

+ 1 - 0
OHSU/sub-0050157/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050157_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

+ 1 - 0
OHSU/sub-0050157/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050157_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kW/51/MD5E-s253297--5d594608faac5a826ee09b4b01406c4a.nii.gz/MD5E-s253297--5d594608faac5a826ee09b4b01406c4a.nii.gz

+ 1 - 0
OHSU/sub-0050157/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050157_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

+ 1 - 0
OHSU/sub-0050157/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050157_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1j/fv/MD5E-s282508--da9e1f4c4f2d04b7870dec70479fd524.nii.gz/MD5E-s282508--da9e1f4c4f2d04b7870dec70479fd524.nii.gz

+ 1 - 0
OHSU/sub-0050157/mri/Tian_Subcortex_S2_7T_sub-0050157_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

+ 1 - 0
OHSU/sub-0050157/mri/Tian_Subcortex_S2_7T_sub-0050157_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4p/f9/MD5E-s21480--16f167d8f061a9df15f135334478146f.nii.gz/MD5E-s21480--16f167d8f061a9df15f135334478146f.nii.gz

+ 1 - 0
OHSU/sub-0050157/mri/aal3_sub-0050157_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

+ 1 - 0
OHSU/sub-0050157/mri/aal3_sub-0050157_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zp/mX/MD5E-s192796--9b6f8d407edbdd3929ef87a5daca61a2.nii.gz/MD5E-s192796--9b6f8d407edbdd3929ef87a5daca61a2.nii.gz

+ 1 - 0
OHSU/sub-0050157/mri/anatomy3_sub-0050157_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

+ 1 - 0
OHSU/sub-0050157/mri/anatomy3_sub-0050157_T1w.nii.gz

@@ -0,0 +1 @@
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+ 1 - 0
OHSU/sub-0050157/mri/anon_misub-0050157_T1w.nii.gz

@@ -0,0 +1 @@
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+ 1 - 0
OHSU/sub-0050157/mri/anon_msub-0050157_T1w.nii.gz

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+ 1 - 0
OHSU/sub-0050157/mri/cat_sub-0050157_T1w.nii.gz

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+ 1 - 0
OHSU/sub-0050157/mri/cobra_sub-0050157_T1w.csv

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+ 1 - 0
OHSU/sub-0050157/mri/cobra_sub-0050157_T1w.nii.gz

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+ 1 - 0
OHSU/sub-0050157/mri/hammers_sub-0050157_T1w.csv

@@ -0,0 +1 @@
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+ 1 - 0
OHSU/sub-0050157/mri/hammers_sub-0050157_T1w.nii.gz

@@ -0,0 +1 @@
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+ 1 - 0
OHSU/sub-0050157/mri/ibsr_sub-0050157_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

+ 1 - 0
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OHSU/sub-0050157/surf/rh.thickness.sub-0050157_T1w

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mx/8G/MD5E-s385247--13d4a88a8171249f96eb77257de35122/MD5E-s385247--13d4a88a8171249f96eb77257de35122

+ 1 - 0
OHSU/sub-0050157/surf/rh.toroGI20mm.sub-0050157_T1w

@@ -0,0 +1 @@
+../../../.git/annex/objects/KF/Zx/MD5E-s385247--5b6f1e437834f773e03bed761ac43434/MD5E-s385247--5b6f1e437834f773e03bed761ac43434

+ 1 - 0
OHSU/sub-0050157/surf/s12.mesh.thickness.resampled_32k.sub-0050157_T1w.dat

@@ -0,0 +1 @@
+../../../.git/annex/objects/vW/V1/MD5E-s2599264--e442533a3c9dad4a0f37720dd705fcf9.dat/MD5E-s2599264--e442533a3c9dad4a0f37720dd705fcf9.dat

+ 1 - 0
OHSU/sub-0050157/surf/s12.mesh.thickness.resampled_32k.sub-0050157_T1w.gii

@@ -0,0 +1 @@
+../../../.git/annex/objects/k2/Fk/MD5E-s2285--965bba6a49d81d5f70ea0814d0988e99.gii/MD5E-s2285--965bba6a49d81d5f70ea0814d0988e99.gii

+ 1 - 0
OHSU/sub-0050157/surf/s22.mesh.area.resampled_32k.sub-0050157_T1w.dat

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZM/P4/MD5E-s2599264--dc94cd6aa493b851a125e80a04c8a1a3.dat/MD5E-s2599264--dc94cd6aa493b851a125e80a04c8a1a3.dat

+ 1 - 0
OHSU/sub-0050157/surf/s22.mesh.area.resampled_32k.sub-0050157_T1w.gii

@@ -0,0 +1 @@
+../../../.git/annex/objects/X9/Vf/MD5E-s2265--2fb6b9e64919037e3a4bc41b609d4bc2.gii/MD5E-s2265--2fb6b9e64919037e3a4bc41b609d4bc2.gii

+ 1 - 0
OHSU/sub-0050157/surf/s22.mesh.depth.resampled_32k.sub-0050157_T1w.dat

@@ -0,0 +1 @@
+../../../.git/annex/objects/qQ/WZ/MD5E-s2599264--e46fe13abedc0d447fbda0b3e51f52da.dat/MD5E-s2599264--e46fe13abedc0d447fbda0b3e51f52da.dat

+ 1 - 0
OHSU/sub-0050157/surf/s22.mesh.depth.resampled_32k.sub-0050157_T1w.gii

@@ -0,0 +1 @@
+../../../.git/annex/objects/2z/v2/MD5E-s2269--d40af58dbb9a4dad1e5fdcb821faaf29.gii/MD5E-s2269--d40af58dbb9a4dad1e5fdcb821faaf29.gii

+ 1 - 0
OHSU/sub-0050157/surf/s22.mesh.fractaldimension.resampled_32k.sub-0050157_T1w.dat

@@ -0,0 +1 @@
+../../../.git/annex/objects/q4/q1/MD5E-s2599264--0cf97d4f48a73b66f6e6c5892d0c5f4e.dat/MD5E-s2599264--0cf97d4f48a73b66f6e6c5892d0c5f4e.dat

+ 0 - 0
OHSU/sub-0050157/surf/s22.mesh.fractaldimension.resampled_32k.sub-0050157_T1w.gii


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